Hi Tim.
The FIRMAGene code is not designed to play nice with NAs in the probe
level data. I'm somewhat hesitant to include this because it would
require making assumptions about how people have introduced NAs into
their CEL files.
If you want to exclude a subset of the standard collection
Hi. Update aroma.affymetrix to v1.3.0 and report back. If/when you
get the error, please also report what traceback() outputs.
/Henrik
PS. I'm even surprised that you got this far because the version you
have now is not compatible with the R.filesets version you have.
On Mon, Nov 16, 2009 at 5:
Hi,
I've been experimenting with using FIRMAGene to detect differential
splicing, and while the package seems to be working well we're seeing
quite a lot of splicing events which we think are due to poorly-
detected probes on the array. I've been trying to filter these probes
out by identifying th
