[aroma.affymetrix] Re: Accessing individual probe intensities

2011-07-12 Thread Maria Rodrigo-Domingo
Dear Henrik, Thank you very much for your time and for your answers, they have been extremely useful. We are looking at different possibilities for the comparison between NGS and the exon array, also at the gene and exon-levels as you propose, so we would like to have as many options as possible.

Re: [aroma.affymetrix] Re: Accessing individual probe intensities

2011-07-11 Thread Henrik Bengtsson
Hi. On Sun, Jul 10, 2011 at 11:05 PM, Maria Rodrigo-Domingo wrote: > Hi Henrik, > > Thanks a lot for your reply. > > I am aware that probes/cells are not annotated just like probesets or > transcript clusters, so I just didn't explain my problem properly. I > have already done the analysis at the

[aroma.affymetrix] Re: Accessing individual probe intensities

2011-07-10 Thread Maria Rodrigo-Domingo
Hi Henrik, Thanks a lot for your reply. I am aware that probes/cells are not annotated just like probesets or transcript clusters, so I just didn't explain my problem properly. I have already done the analysis at the exon and transcript level using your ExonRmaPlm() with mergeGroups=TRUE or FALSE