Hi Mark,
Thank you so much for your reply. I am new to array analysis so I am
open to any suggestions. My original thought was to do normalize
using rank. I am not sure if it matters, but my end goal is to be
able to do FIRMA analysis between my groups
I realize that the data probably will
Hi Sarah.
There is currently nothing readily available for batch effect
adjustment in aroma.affymetrix (that I know of). But, there are ways
of doing it that wouldn't be too difficult to do as a once-off. What
did you have in mind?
... however, even with a batch adjustment, it may still
