Re: [aroma.affymetrix] Re: FIRMAGene with masked CEL files

2009-11-24 Thread Mark Robinson
Hi Jiang. Perhaps this page will get you started: http://groups.google.com/group/aroma-affymetrix/web/creating-cdf-files-from-scratch Cheers, Mark On 20-Nov-09, at 7:59 AM, camelbbs wrote: > Hi Mark, > I want to ask how to construct custom CDF and how to replace it in CEL > files. > Thanks, > B

[aroma.affymetrix] Re: FIRMAGene with masked CEL files

2009-11-19 Thread camelbbs
Hi Mark, I want to ask how to construct custom CDF and how to replace it in CEL files. Thanks, Best, Jiang On Nov 16, 7:18 pm, Mark Robinson wrote: > Hi Tim. > > The FIRMAGene code is not designed to play nice with NAs in the probe   > level data.  I'm somewhat hesitant to include this because it

[aroma.affymetrix] Re: FIRMAGene with masked CEL files

2009-11-17 Thread Tim Rayner
Hi Mark, Thanks very much for the feedback. In the spirit of completeness I tried upgrading aroma.affymetrix and emptying the caches, although given your reply I'm not surprised it didn't work (see attached). I'll try with the custom CDF file approach and let you know how I get on. Cheers, Tim