[aroma.affymetrix] Re: annotation of ST gene Arrays

2009-12-16 Thread Mark Robinson
Hi Wade. I think the problem lies with the 'ragene10st*probeset*.db' library. How about trying the symbols from the 'ragene10sttranscriptcluster.db' package: http://www.bioconductor.org/packages/release/data/annotation/html/ragene10sttranscriptcluster.db.html I can't remember when this change

[aroma.affymetrix] Re: annotation of ST gene Arrays

2009-02-10 Thread Mark Robinson
Hi Simon. See comments below. > I am using the mouse gene ST arrays and am having problems with > annotation. When i write a csv file, the annotation is only the > probeset_id, no gene names or accession numbers etc. That's what it should be. Actually, its the 'transcript_cluster_id'. Prev