[aroma.affymetrix] Re: copy number calls in the output

2009-08-22 Thread ssv
Hi Pierre Thanks for the answer. we were comparing one of the HMM models with CBS and GLAD. I will try haarseg too. some times (my) ignorance is embarrassing. suresh --~--~-~--~~~---~--~~ When reporting problems on aroma.affymetrix, make sure 1) to run the lat

[aroma.affymetrix] Re: copy number calls in the output

2009-08-21 Thread Pierre Neuvial
Hi Suresh, The answer is no as CBS is just a segmentation method, not a segmentation and calling method as GLAD is. So what you can compare between the two is just the output of the segmentation. FYI there is also a wrapper for HaarSeg (also segmentation only) in aroma.affymetrix, in case you'd