Hi Elizabeth.
Indeed, this is certainly a R 2.10 problem, related to changes in
'preprocessCore' ...
processCore v 1.7.9 (BioC 2.5, R 2.10.x):
SEXP R_rlm_rma_default_model(SEXP Y, SEXP PsiCode, SEXP PsiK, SEXP
Scales){
processCore v 1.6.0 (BioC 2.4, R 2.9.x):
SEXP
More precisely, the issue occurs with preprocessCore v1.7.1 and newer.
I've made a patch available (that is backward compatible):
library(aroma.affymetrix);
downloadPackagePatch(aroma.affymetrix);
that should work for now. Does it?
There has been so much development and late fixes for R
Dear All,
I solve the problem. When I use R-2.9.2, then I can fit PLM.
Hailei
On Oct 15, 2009 3:59pm, hailei@gmail.com hailei@gmail.com wrote:
Dear All,
I am analyzing human affy exon arrays for first time. I followed the
steps listed in website:
Hi Hailei.
For starters, can you give the *full* output of your sessionInfo()? The
error you are getting has something to do with the 'preprocessCore'
package and I first want to check whether it is a package version mismatch
error.
I haven't used aroma.affymetrix on R 2.10 and I don't know if
