Hi.
I see, the instructions I gave you before did not write copy numbers
*relative to a reference*, but copy number *signals as-is* (=on a
non-standardized scale). The latter is what is outputted by CRMAv2.
The task of standardizing toward a reference is passed on to
downstream methods, e.g. CBS
First, retry with:
sm - CbsModel(dsN);
fit(sm, verbose=-10);
/Henrik
On Fri, Mar 9, 2012 at 12:39 PM, Yu Song ys...@oakland.edu wrote:
Hi Henrik,
Thanks a lot.
I read http://aroma-project.org/howtos/exportTotalCnRatioSet. So I
start over with:
1st prenormalization
2nd get copy number
20 data files should be no problems. I'm still quite sure that you
have '#' in your generated column names. Could you send a file
containing the first 30 rows of the generate
'2012,ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY,total.txt' file?
/Henrik
On Mon, Mar 5, 2012 at 7:05 PM, Yu Song
Hi.
On Fri, Mar 2, 2012 at 8:52 AM, Yu Song ys...@oakland.edu wrote:
Dear Mr.Bengtsson,
I am trying to create a data containing the unitName, chromosome
and position from the output CEL of preprocessing.
What type of CEL files? What type of preprocessing?
/H
Is there a certain command to
