Hi,
I have successfully run TumorBoost on my samples. I would like to
retrieve the LOH calls from this. How should I proceed?
Here is the object I created:
dsListf
$normal
AromaUnitFracBCnBinarySet:
Name: OvarianCancer
Tags: ACC,ra,-XY,BPN,-XY,AVG,FLN,-XY
Full name:
Hi,
I'd suggest that you use the Paired PSCBS segmentation method and the
LOH caller proposed in the PSCBS paper:
A.B. Olshen*, H. Bengtsson*, P. Neuvial, P. Spellman, R.A. Olshen,
V.E. Seshan, Parent-specific copy number in paired tumor-normal
studies using circular binary segmentation,
