On Mon, Jun 1, 2015 at 9:17 AM, Arshi Arora wrote:
> I was able to get the plot. But I reinstalled sfit anyways and it works now!
> Thanks so much Henrik.
Great to hear.
> I get a lot of these warnings after running - any advice ?
>
> Argument 'centers' for matrixStats::rowMads() has been renam
I was able to get the plot. But I reinstalled sfit anyways and it works
now! Thanks so much Henrik.
I get a lot of these warnings after running - any advice ?
Argument 'centers' for matrixStats::rowMads() has been renamed to
'center'. Please update code accordingly.
I also get this warning at
BTW,
the output of
packageDescription("sfit")
is also useful for troubleshooting - it will particularly tell you
when and for what version of R it was build and installed.
/Henrik
On Fri, May 29, 2015 at 4:33 PM, Henrik Bengtsson
wrote:
> This all looks good, so it's indeed a weird error tha
This all looks good, so it's indeed a weird error that I most likely
think is due to some hiccups when the 'sfit' package was installed
(which defines the cfit() function).
For troubleshooting, first try:
url <-
"https://raw.githubusercontent.com/HenrikBengtsson/aroma.core/develop/tests/fitGenot
Sorry about not posting that.
> sessionInfo()
R version 3.2.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.2 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8LC_MESSA
First of all, what versions of packages do you have, e.g. what's the
output sessionInfo() after doing:
library("aroma.affymetrix")
library("sfit")
sessionInfo()
/Henrik
On Fri, May 29, 2015 at 9:51 AM, arshi wrote:
> Hi, I am following the vignette on paired total copy number analysis.
>
> So
Hi, I am following the vignette on paired total copy number analysis.
So far, my cdf files and the rawData directory structure looks ok. When I
do
dsList <- doCRMAv2(dataSet, cdf=cdf, combineAlleles=FALSE, verbose=verbose)
I get the following error and I can't see a dsList object created.
Er
