Oh, I missed it, but that old vignette does indeed have a big fat red
note saying it is not CRMAv2 and provides a link to the one you should
use. /H
On Wed, Jan 6, 2010 at 10:23 AM, Henrik Bengtsson
wrote:
> Hi,
>
> fitCnProbes() and fit() give identical results for CN units that
> consist of si
Hi,
fitCnProbes() and fit() give identical results for CN units that
consist of single CN probes. More details on Page 'Improving
processing time':
http://groups.google.com/group/aroma-affymetrix/web/improving-processing-time
This is also explained in the Vignette 'Estimation of total copy
nu
Dear Henrik,
there is a change in the fitting method between the latest and former
vignette for SNP5&6.
# old vignette style
fit(plm, verbose=verbose)
# new vignette style
if (length(findUnitsTodo(plm)) > 0) {
# Fit CN probes quickly (~5-10s/array + some overhead)
units <- fitCnProbes(plm,
