Re: [aroma.affymetrix] read in CEL.gz files

2014-05-28 Thread Henrik Bengtsson
Hi, slow response but answers below. On Wed, Apr 2, 2014 at 8:20 AM, hr wrote: > Dear Henrik, > > Is there a way to read in CEL.gz files rather than .CEL files? Unfortunately not, only non-compressed CEL files are supported. This is mainly because the Affymetrix Fusion SDK that we utilize via t

[aroma.affymetrix] read in CEL.gz files

2014-04-02 Thread hr
Dear Henrik, Is there a way to read in CEL.gz files rather than .CEL files? Also, do you provide an example (couldn't find one on the aroma homepage) on how to go from a CDF file and a bunch of CEL files to a final expression matrix normalized with RMA? Essentially I am looking for the equivale