Re: [aroma.affymetrix] Problems updating aroma.affymetrix

2010-09-02 Thread Matt
After updating to R-2.11.1, I no longer have this problem. Thanks. Matt On Thu, Sep 2, 2010 at 2:08 AM, Henrik Bengtsson wrote: > Hi, > > if you are following Pierre's advice and still getting *that* error > message my best guess is that you are getting an error while > installing one of the pac

Re: [aroma.affymetrix] Problems updating aroma.affymetrix

2010-09-01 Thread Henrik Bengtsson
Hi, if you are following Pierre's advice and still getting *that* error message my best guess is that you are getting an error while installing one of the packages that aroma.affymetrix depends on, which in turn probably will fail the installation of aroma.affymetrix itself. The reason why one of

Re: [aroma.affymetrix] Problems updating aroma.affymetrix

2010-09-01 Thread Mark Robinson
Hi Matt. Another point to mention is that you should update your version of R ... 2.7.x is >2.5 years old, which is a long time in R. I'd recommend 2.11.x .. Cheers, Mark On 2010-09-02, at 2:51 PM, Pierre Neuvial wrote: > [Forwarding this to the list so that others can read this thread] > >

Re: [aroma.affymetrix] Problems updating aroma.affymetrix

2010-09-01 Thread Pierre Neuvial
[Forwarding this to the list so that others can read this thread] Pierre On Wed, Sep 1, 2010 at 12:57 PM, Matt wrote: > Hi Pierre, > > Thanks for the reply. I guess it's a problem with the source because what > you say is exactly what I did and I get the error message shown. > > Best, > Matt > >

Re: [aroma.affymetrix] Problems updating aroma.affymetrix

2010-09-01 Thread Pierre Neuvial
Hi Matt, You want to *update* the package, not *patch* it: the difference between updates and patches is explained at http://aroma-project.org/howtos/updateOrPatch. So, to update aroma.affymetrix, do: source("http://aroma-project.org/hbLite.R";); hbInstall("aroma.affymetrix"); as explained at h