Re: [Artemis-users] Export annotated Artemis data to CLC Bio

2010-10-21 Thread Jack van de Vossenberg
Addition: For Artemis export to GFF, I changed "fasta_record" to "source", which is a Feature Key in standard nomenclature*, and added the mandatory fields /organism= and /mol_type=, but every time I get a message that the source field cannot be exported. Is that normal behaviour? Can anyone

[Artemis-users] Question / Feature request: ORFs that do not run over contig borders

2007-06-25 Thread Jack van de Vossenberg
Dear all, I am not sure if this came up already, but I have a question. If it cannot be done I'll make it a feature request. We have a 454 genome sequence, which is fragmented into many contigs. We used a fasta file of all contigs to start genome annotation. Artemis was used to determine ORFs