Dear Tim,
Import in seqret was not faster than manual adaptation of the artemis
output file. This is how I did it (no guarantee...):
1) Replace fasta_record with source, keep the right number of spaces
(features start at column 22), add the qualifiers /organism=text
/mol_type=genomic DNA
Addition:
For Artemis export to GFF, I changed fasta_record to source, which
is a Feature Key in standard nomenclature*, and added the mandatory
fields /organism= and /mol_type=, but every time I get a message that
the source field cannot be exported.
Is that normal behaviour? Can anyone
Hi Jack
Artemis is not really meant as a conversion tool between formats and in
particular EMBL/GenBank to GFF, although it will have a go. You could try
EMBOSS (seqret) to convert. However, it sounds like you have multiple fasta
records in your file which may cause problems if you are writing