I am right now trying to compile a c++ code using autoconf and automake.
I have been able to compile this code using autoconf and automake under a
linux 64
platform, using the g++ compiler.
On windows XP 32 platforms, using cygwin, I have been able to compile the
same code, using
the icl c++ intel compiler, but I had to tweak some of the compilation, at
link time.
What happens is that when trying to link the library libISSM.a, automake
tries to gather all the
libISSM_a-objects.o into libISS.a. But because I am using the intel c++ icl
compiler, every object
has been compiled as objects.obj, so that at link time, libISSM.a cannot be
created.
I looked at the compiler doc, and the -o option is replaced on windows by
the -Fe option. Because of that, icl does not recognize the -o naming
option, and the objects are compiled by adding .obj to the end of the .cpp
files.
My question is the folllowing: how do I get autoconf and automake to
recognize it's using icl with a -Fe convention, instead of the -o. Should I
build an implicit rule for the icl compiler? how do I do that?
thank you for any info.
Eric Larour
Jet Propulsion Laboratory
P.S:
here is my Makefile.am, configure.ac for the bulk of the code:
INCLUDES = @DAKOTAINCL@ @PETSCINCL@ @SLEPCINCL@ @MPIINCL@ @MATLABINCL@
@METISINCL@ @PLAPACKINCL@ @BLASLAPACKINCL@ @MKLINCL@ @MUMPSINCL@
@TRIANGLEINCL@
#Compile serial library
lib_LIBRARIES = libISSM.a
#Serial compilation
libISSM_a_SOURCES = ./objects/objects.h\
./objects/Object.h\
./objects/Element.h\
./objects/Element.cpp\
./objects/Material.h\
./objects/Material.cpp\
./objects/Load.h\
./objects/Load.cpp\
./objects/OptArgs.h\
./objects/OptPars.h\
./objects/SolverEnum.h\
./objects/Contour.h\
./objects/Contour.cpp\
./objects/Friction.h\
./objects/Friction.cpp\
./objects/DakotaPlugin.h\
./objects/DakotaPlugin.cpp\
./objects/Node.h\
./objects/Node.cpp\
./objects/Result.h\
./objects/Result.cpp\
./objects/Tria.h\
./objects/Tria.cpp\
./objects/Sing.h\
./objects/Sing.cpp\
./objects/Beam.h\
./objects/Beam.cpp\
./objects/Penta.h\
./objects/Penta.cpp\
./objects/Matice.h\
./objects/Matice.cpp\
./objects/Matpar.h\
./objects/Matpar.cpp\
./objects/Input.h\
./objects/Input.cpp\
./objects/ParameterInputs.h\
./objects/ParameterInputs.cpp\
./objects/Spc.cpp\
./objects/Spc.h\
./objects/Rgb.cpp\
./objects/Rgb.h\
./objects/Penpair.cpp\
./objects/Penpair.h\
./objects/Pengrid.cpp\
./objects/Pengrid.h\
./objects/Icefront.cpp\
./objects/Icefront.h\
./objects/Param.cpp\
./objects/Param.h\
./objects/NodeSets.cpp\
./objects/NodeSets.h\
./DataSet/DataSet.cpp\
./DataSet/DataSet.h\
./shared/shared.h\
./shared/Alloc/alloc.h\
./shared/Alloc/alloc.cpp\
./shared/Matlab/matlabshared.h\
./shared/Matlab/PrintfFunction.cpp\
./shared/Matlab/ModuleBoot.cpp\
./shared/Matlab/mxGetAssignedField.cpp\
./shared/Matlab/mxGetField.cpp\
./shared/Matlab/CheckNumMatlabArguments.cpp\
./shared/Matrix/matrix.h\
./shared/Matrix/MatrixUtils.cpp\
./shared/Dofs/dofs.h\
./shared/Dofs/dofsetgen.cpp\
./shared/Dofs/DistributeNumDofs.cpp\
./shared/Numerics/numerics.h\
./shared/Numerics/isnan.h\
./shared/Numerics/isnan.cpp\
./shared/Numerics/GaussPoints.h\
./shared/Numerics/cross.cpp\
./shared/Numerics/norm.cpp\
./shared/Numerics/GaussPoints.cpp\
./shared/Numerics/BrentSearch.cpp\
./shared/Numerics/OptFunc.cpp\
./shared/Numerics/extrema.cpp\
./shared/Exceptions/exceptions.h\
./shared/Exceptions/Exceptions.cpp\
./shared/Exceptions/exprintf.cpp\
./shared/Exp/exp.h\
./shared/Exp/IsInPoly.cpp\
./shared/Exp/IsInPolySerial.cpp\
./shared/Exp/DomainOutlineRead.cpp\
./shared/TriMesh/trimesh.h\
./shared/TriMesh/AssociateSegmentToElement.cpp\
./shared/TriMesh/GridInsideHole.cpp\
./shared/TriMesh/OrderSegments.cpp\
./shared/TriMesh/SplitMeshForRifts.cpp\
./shared/TriMesh/TriMeshUtils.cpp\
./shared/Sorting/binary_search.cpp\
./shared/Sorting/sorting.h\
./shared/Elements/elements.h\
./shared/Elements/ResolvePointers.cpp\
./shared/Elements/Paterson.cpp\
./shared/Elements/GetElementNodeData.cpp\
./shared/String/isdistributed.cpp\
./shared/String/sharedstring.h\
./toolkits/petsc\
./toolkits/petsc/patches\
./toolkits/petsc/patches/petscpatches.h\
./toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp\
./toolkits/petsc/patches/MatlabVectorToPetscVector.cpp\
./toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp\
./toolkits/petsc/patches/PetscVectorToMatlabVector.cpp\
./toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp\
./toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp\
./toolkits/petsc/patches/PetscDetermineLocalSize.cpp\
./toolkits/petsc/patches/VecTranspose.cpp\
./toolkits/petsc/patches/VecToMPISerial.cpp\
./toolkits/petsc/patches/MatToSerial.cpp\
./toolkits/petsc/patches/VecMerge.cpp\
./toolkits/petsc/patches/NewVec.cpp\
./toolkits/petsc/patches/NewVecFromLocalSize.cpp\
./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp\
./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp\
./toolkits/petsc/patches/NewMat.cpp\
./toolkits/petsc/patches/SerialToVec.cpp\
./toolkits/petsc/patches/VecFree.cpp\
./toolkits/petsc/patches/VecDuplicatePatch.cpp\
./toolkits/petsc/patches/KSPFree.cpp\
./toolkits/petsc/patches/ISFree.cpp\
./toolkits/petsc/patches/MatFree.cpp\
./toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp\
./toolkits/petsc/patches/VecPartition.cpp\
./toolkits/petsc/patches/MatPartition.cpp\
./toolkits/petsc/patches/MatInvert.cpp\
./toolkits/petsc/patches/MatMultPatch.cpp\
./toolkits/petsc/petscincludes.h\
./toolkits/mpi/mpiincludes.h\
./toolkits/mpi/patches/mpipatches.h\
./toolkits/mpi/patches/MPI_Upperrow.cpp\
./toolkits/mpi/patches/MPI_Lowerrow.cpp\
./toolkits/mpi/patches/MPI_Boundariesfromrange.cpp\
./toolkits/metis/metisincludes.h\
./toolkits/triangle/triangleincludes.h\
./toolkits.h\
./io/io.h\
./io/FetchData.cpp\
./io/WriteData.cpp\
./io/WriteDataToDisk.cpp\
./io/SerialFetchData.cpp\
./io/SerialWriteData.cpp\
./io/ParallelFetchData.cpp\
./io/ParallelFetchInteger.cpp\
./io/ParallelFetchMat.cpp\
./io/ParallelFetchScalar.cpp\
./io/ParallelFetchString.cpp\
./io/ModelFetchData.cpp\
./io/WriteNodeSets.cpp\
./io/WriteParams.cpp\
./io/FetchNodeSets.cpp\
./io/FetchRifts.cpp\
./io/ParameterInputsInit.cpp\
./io/pfopen.cpp\
./io/pfclose.cpp\
./EnumDefinitions/EnumDefinitions.h\
./EnumDefinitions/EnumDefinitions.cpp\
./EnumDefinitions/AnalysisTypeAsEnum.cpp\
./ModelProcessorx/Model.h\
./ModelProcessorx/Model.cpp\
./ModelProcessorx/CreateDataSets.cpp\
./ModelProcessorx/CreateParameters.cpp\
./ModelProcessorx/DiagnosticHoriz/CreateElementsNodesAndMaterialsDiagnosticHoriz.cpp\
./ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp
\
./ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp\
./ModelProcessorx/DiagnosticHoriz/CreateParametersDiagnosticHoriz.cpp\
./ModelProcessorx/DiagnosticVert/CreateElementsNodesAndMaterialsDiagnosticVert.cpp\
./ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp \
./ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp\
./ModelProcessorx/DiagnosticHutter/CreateElementsNodesAndMaterialsDiagnosticHutter.cpp\
./ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp \
./ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp\
./ModelProcessorx/DiagnosticStokes/CreateElementsNodesAndMaterialsDiagnosticStokes.cpp\
./ModelProcessorx/DiagnosticStokes/CreateConstraintsDiagnosticStokes.cpp \
./ModelProcessorx/DiagnosticStokes/CreateLoadsDiagnosticStokes.cpp\
./ModelProcessorx/SlopeCompute/CreateElementsNodesAndMaterialsSlopeCompute.cpp\
./ModelProcessorx/SlopeCompute/CreateConstraintsSlopeCompute.cpp \
./ModelProcessorx/SlopeCompute/CreateLoadsSlopeCompute.cpp\
./ModelProcessorx/Control/CreateParametersControl.cpp\
./ModelProcessorx/Thermal/CreateElementsNodesAndMaterialsThermal.cpp\
./ModelProcessorx/Thermal/CreateConstraintsThermal.cpp\
./ModelProcessorx/Thermal/CreateLoadsThermal.cpp\
./ModelProcessorx/Thermal/CreateParametersThermal.cpp\
./ModelProcessorx/Melting/CreateElementsNodesAndMaterialsMelting.cpp\
./ModelProcessorx/Melting/CreateConstraintsMelting.cpp\
./ModelProcessorx/Melting/CreateLoadsMelting.cpp\
./ModelProcessorx/Melting/CreateParametersMelting.cpp\
./ModelProcessorx/Prognostic/CreateElementsNodesAndMaterialsPrognostic.cpp\
./ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp\
./ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp\
./ModelProcessorx/Prognostic/CreateParametersPrognostic.cpp\
./ModelProcessorx/Qmu/CreateParametersQmu.cpp\
./Dofx/Dofx.h\
./Dofx/Dofx.cpp\
./Dux/Dux.h\
./Dux/Dux.cpp\
./GriddataMeshToGridx/GriddataMeshToGridx.h\
./GriddataMeshToGridx/GriddataMeshToGridx.cpp\
./ControlConstrainx/ControlConstrainx.h\
./ControlConstrainx/ControlConstrainx.cpp\
./Misfitx/Misfitx.h\
./Misfitx/Misfitx.cpp\
./Orthx/Orthx.h\
./Orthx/Orthx.cpp\
./Gradjx/Gradjx.h\
./Gradjx/Gradjx.cpp\
./UpdateFromInputsx/UpdateFromInputsx.h\
./UpdateFromInputsx/UpdateFromInputsx.cpp\
./UpdateGeometryx/UpdateGeometryx.h\
./UpdateGeometryx/UpdateGeometryx.cpp\
./UpdateNodePositionsx/UpdateNodePositionsx.h\
./UpdateNodePositionsx/UpdateNodePositionsx.cpp\
./ConfigureObjectsx/ConfigureObjectsx.h\
./ConfigureObjectsx/ConfigureObjectsx.cpp\
./ComputePressurex/ComputePressurex.h\
./ComputePressurex/ComputePressurex.cpp\
./BuildNodeSetsx/BuildNodeSetsx.h\
./BuildNodeSetsx/BuildNodeSetsx.cpp\
./BuildNodeSetsx/PartitionSets.cpp\
./SpcNodesx/SpcNodesx.h\
./SpcNodesx/SpcNodesx.cpp\
./MpcNodesx/MpcNodesx.h\
./MpcNodesx/MpcNodesx.cpp\
./InterpFromGridx/InterpFromGridx.cpp\
./InterpFromGridx/InterpFromGridx.h\
./InterpFromMesh2dx/InterpFromMesh2dx.cpp\
./InterpFromMesh2dx/InterpFromMesh2dx.h\
./InterpFromMesh3dx/InterpFromMesh3dx.cpp\
./InterpFromMesh3dx/InterpFromMesh3dx.h\
./HoleFillerx/HoleFillerx.cpp\
./HoleFillerx/HoleFillerx.h\
./MeshPartitionx/MeshPartitionx.cpp\
./MeshPartitionx/MeshPartitionx.h\
./ContourToMeshx/ContourToMeshx.cpp\
./ContourToMeshx/ContourToMeshx.h\
./ContourToNodesx/ContourToNodesx.cpp\
./ContourToNodesx/ContourToNodesx.h\
./Reducevectorgtosx/Reducevectorgtosx.cpp\
./Reducevectorgtosx/Reducevectorgtosx.h\
./Reducematrixfromgtofx/Reducematrixfromgtofx.cpp\
./Reducematrixfromgtofx/Reducematrixfromgton.cpp\
./Reducematrixfromgtofx/Reducematrixfromgtofx.h\
./Reduceloadfromgtofx/Reduceloadfromgtofx.h\
./Reduceloadfromgtofx/Reduceloadfromgtofx.cpp\
./NormalizeConstraintsx/NormalizeConstraintsx.cpp\
./NormalizeConstraintsx/NormalizeConstraintsx.h\
./NodeConnectivityx/NodeConnectivityx.cpp\
./NodeConnectivityx/NodeConnectivityx.h\
./ElementConnectivityx/ElementConnectivityx.cpp\
./ElementConnectivityx/ElementConnectivityx.h\
./SystemMatricesx/SystemMatricesx.cpp\
./SystemMatricesx/SystemMatricesx.h\
./PenaltyConstraintsx/PenaltyConstraintsx.cpp\
./PenaltyConstraintsx/PenaltyConstraintsx.h\
./PenaltySystemMatricesx/PenaltySystemMatricesx.cpp\
./PenaltySystemMatricesx/PenaltySystemMatricesx.h\
./Solverx/Solverx.cpp\
./Solverx/Solverx.h\
./Mergesolutionfromftogx/Mergesolutionfromftogx.cpp\
./Mergesolutionfromftogx/Mergesolutionfromftogx.h\
./ProcessParamsx/ProcessParamsx.cpp\
./ProcessParamsx/ProcessParamsx.h\
./Qmux/Qmux.h\
./Qmux/Qmux.cpp\
./Qmux/SpawnCore.cpp\
./Qmux/SpawnCoreSerial.cpp\
./FieldDepthAveragex/FieldDepthAveragex.cpp\
./FieldDepthAveragex/FieldDepthAveragex.h\
./FieldExtrudex/FieldExtrudex.cpp\
./FieldExtrudex/FieldExtrudex.h
libISSM_a_CXXFLAGS = -fPIC -DMATLAB -D_SERIAL_ -ansi -D_GNU_SOURCE
-fno-omit-frame-pointer -pthread -D_CPP_
if LARGEARRAYS
libISSM_a_CXXFLAGS += -D__GCC4BUILD__
else
libISSM_a_CXXFLAGS += -DMX_COMPAT_32 -m32
endif
configure.ac:
AC_INIT(ISSM,[1.0], [Eric Larour <eric.lar...@jpl.nasa.gov>])
AM_CONFIG_HEADER(config.h)
AC_CANONICAL_TARGET
AM_INIT_AUTOMAKE
AC_PROG_RANLIB
AC_PROG_CC([gcc icl])
AC_PROG_CPP
AC_PROG_CXX([g++ icl])
AC_PROG_F77([ifort g77 gfortran])
AC_F77_LIBRARY_LDFLAGS
AM_PROG_CC_C_O
AC_PATH_XTRA
ISSM_OPTIONS
AC_CONFIG_FILES([Makefile
src/Makefile
src/c/Makefile
src/mex/Makefile
bin/Makefile])
AC_OUTPUT
what is in issm_options:
dnl ISSM Options
AC_DEFUN([ISSM_OPTIONS],[
dnl Debugging option check.
AC_ARG_ENABLE([debugging],AS_HELP_STRING([--enable-debugging],
[turn debug support on]),
[enable_debugging=$enableval],[enable_debugging=no])
if test "x$enable_debugging" = xyes; then
AC_DEFINE([_DEBUG_],[1],[Macro to enable debugging in Dakota.])
fi
dnl serial build?
AC_ARG_WITH([serial],
AS_HELP_STRING([--with-serial = value],
[serial compilation.
]),
[SERIAL_VALUE=$withval],[SERIAL_VALUE="yes"])
AC_MSG_CHECKING(for serial compilation)
AM_CONDITIONAL([NOSERIAL], [test $SERIAL_VALUE = no])
AC_MSG_RESULT($SERIAL_VALUE)
dnl parallel build?
AC_ARG_WITH([parallel],
AS_HELP_STRING([--with-parallel = value],
[parallel compilation.
]),
[PARALLEL_VALUE=$withval],[PARALLEL_VALUE="yes"])
AC_MSG_CHECKING(for parallel compilation)
AM_CONDITIONAL([NOPARALLEL], [test $PARALLEL_VALUE = no])
AC_MSG_RESULT($PARALLEL_VALUE)
dnl: check that at least serial or parallel builds have been requested!
if test "$SERIAL_VALUE" != "yes" ; then
if test "$PARALLEL_VALUE" != "yes"; then
AC_MSG_ERROR([cannot request --with-serial=no and
--with-parallel=no at
the same time!])
fi
fi
dnl Matlab directory
AC_ARG_WITH([matlab-dir],
AS_HELP_STRING([--with-matlab-dir = DIR],
[matlab root
directory. necessary for serial build.]),
[MATLAB_ROOT=$withval],[MATLAB_ROOT=""])
if test -d "$MATLAB_ROOT"; then
AC_MSG_CHECKING(for Matlab headers and libraries in
$MATLAB_ROOT)
dnl defaults
HAVE_MATLAB=yes
MATLABINCL=-I"$MATLAB_ROOT/extern/include";
dnl use matlab provided mexext routine to test for extension
MEX=$MATLAB_ROOT/bin/mex
dnl OS-dependent variables and checks
case "${host_os}" in
*linux*)
if test "${host_cpu}" = "x86_64";
then
MEXLIB=-L"$MATLAB_ROOT/bin/glnxa64/ -lmex"
MEXLINK="-pthread -shared
-W2,--version-script,${MATLAB_ROOT}/extern/lib/glnxa64/mexFunction.map";
else
MEXLIB=-L"$MATLAB_ROOT/bin/glnx86/ -lmex"
MEXLINK="-pthread -shared
-W2,--version-script,${MATLAB_ROOT}/extern/lib/glnx86/mexFunction.map";
fi
MEXEXT=`$MATLAB_ROOT/bin/mexext`
MEXEXT=".$MEXEXT"
;;
*darwin9.6.0*)
MEXLIB=-L"$MATLAB_ROOT/bin/maci/ -lmex -lmx"
MEXLINK="-Wl,-twolevel_namespace -undefined error -arch
i386
-Wl,-syslibroot,/Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5
-bundle
-Wl,-exported_symbols_list,$MATLAB_ROOT/extern/lib/maci/mexFunction.map"
MEXEXT=`$MATLAB_ROOT/bin/mexext`
MEXEXT=".$MEXEXT"
;;
*cygwin*)
MEXLIB="-dll -export:mexFunction
-LIBPATH:\"$MATLAB_ROOT\extern\lib\win32\microsoft\" libmx.lib libmex.lib
libmat.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib
advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib
odbccp32.lib -NOLOGO -INCREMENTAL:NO"
MEXEXT=`$MATLAB_ROOT/bin/mexext.bat`
MEXEXT=".$MEXEXT"
;;
esac
AC_DEFINE([_HAVE_MATLAB_],[1],[with Matlab in ISSM src])
AC_SUBST([MATLABINCL])
AC_SUBST([MEX])
AC_SUBST([MEXEXT])
AC_SUBST([MEXLIB])
AC_SUBST([MEXLINK])
AC_MSG_RESULT($HAVE_MATLAB)
else
HAVE_MATLAB=no
fi
if test $HAVE_MATLAB = no; then
if test "$SERIAL_VALUE" = "yes" ; then
AC_MSG_ERROR([--with-matlab-dir missing. Matlab is
needed to run ISSM
serially!])
fi
fi
dnl get version number
if test $HAVE_MATLAB = yes; then
AX_MATLAB_VERSION
dnl if matlab version is 7.5 and more, and if platform is
x86_64, then
compile with largearray
dnl default is no
largearrays=no
if test $MATLAB_MAJOR -ge 7; then
if test $MATLAB_MINOR -ge 5; then
if test "${host_cpu}" = "x86_64"; then
largearrays=yes
fi
fi
fi
fi
AM_CONDITIONAL(LARGEARRAYS, test x$largearrays = xyes)
dnl Triangle directory
AC_ARG_WITH([triangle-dir],
AS_HELP_STRING([--with-triangle-dir = DIR], [triangle
root directory.
necessary for serial build]),
[TRIANGLE_ROOT=$withval],[TRIANGLE_ROOT=""])
AC_MSG_CHECKING(for Triangle headers and libraries )
if test -d "$TRIANGLE_ROOT"; then
dnl defaults
HAVE_TRIANGLE=yes
TRIANGLEINCL=-I$TRIANGLE_ROOT/
TRIANGLELIB=$TRIANGLE_ROOT/triangle.a
AC_DEFINE([_HAVE_TRIANGLE_],[1],[with Triangle in ISSM src])
AC_SUBST([TRIANGLEINCL])
AC_SUBST([TRIANGLELIB])
else
HAVE_TRIANGLE=no
fi
AC_MSG_RESULT($HAVE_TRIANGLE)
AC_MSG_CHECKING(for triangle and parallel status)
if test $HAVE_TRIANGLE = no; then
if test "$SERIAL_VALUE" = "yes" ; then
AC_MSG_ERROR([--with-triangle-dir missing. Triangle is
needed to run
ISSM serially!])
fi
fi
AC_MSG_RESULT(ok)
dnl Dakota directory
AC_ARG_WITH([dakota-dir],
AS_HELP_STRING([--with-dakota-dir = DIR], [dakota
root directory.
necessary for serial build]),
[DAKOTA_ROOT=$withval],[DAKOTA_ROOT=""])
AC_MSG_CHECKING(for Dakota )
if test -d "$DAKOTA_ROOT"; then
dnl defaults
HAVE_DAKOTA=yes
DAKOTAINCL=-I$DAKOTA_ROOT/include
DAKOTALIB="-L$DAKOTA_ROOT/lib -ldakota -lteuchos -lpecos
-lfftw3 -llhs
-levidence -lsurfpack -lconmin -lddace -lfsudace -ljega -lcport -lopt
-lpsuade -lnewmat -lncsuopt -lgsl -lquadrature -lcoliny -lcolin -lpebbl
-lutilib -l3po -lnappspack -lappspack -lconveyor -lshared -lcdd -lamplsolver
"
AC_DEFINE([_HAVE_DAKOTA_],[1],[with Dakota in ISSM src])
AC_SUBST([DAKOTAINCL])
AC_SUBST([DAKOTALIB])
else
HAVE_DAKOTA=no
fi
AC_MSG_RESULT($HAVE_DAKOTA)
dnl Metis directory
AC_ARG_WITH([metis-dir],
AS_HELP_STRING([--with-metis-dir = DIR],
[metis root directory.
necessary for serial build]),
[METIS_ROOT=$withval],[METIS_ROOT=""])
if test -d "$METIS_ROOT"; then
AC_MSG_CHECKING(for Metis headers and libraries in $METIS_ROOT)
dnl defaults
HAVE_METIS=yes
case "${host_os}" in
*cygwin*)
METISLIB="-LIBPATH:\"$METIS_ROOT\" libmetis.lib"
;;
*linux*)
METISLIB=-L"$METIS_ROOT/ -lmetis"
;;
*darwin9.6.0*)
METISLIB=-L"$METIS_ROOT/ -lmetis"
;;
esac
METISINCL=-I"$METIS_ROOT/Lib"
AC_DEFINE([_HAVE_METIS_],[1],[with Metis in ISSM src])
AC_SUBST([METISINCL])
AC_SUBST([METISLIB])
else
HAVE_METIS=no
fi
if test $HAVE_METIS = no; then
AC_MSG_ERROR([--with-metis-dir missing. Metis is needed to run ISSM]);
else
AC_MSG_RESULT($HAVE_METIS)
fi
dnl Mpi options!
AC_MSG_CHECKING(for mpi...)
AC_ARG_WITH([mpi-lib],
AS_HELP_STRING([--with-mpi-lib = otions],
[mpi options, for ex:
"-L$MPIROOT -lmpich]),
[MPILIB=$withval],[MPILIB=""])
AC_ARG_WITH([mpi-include],
AS_HELP_STRING([--with-mpi-include = DIR],
[mpi include
directory, necessary for parallel build]),
[MPI_INCLUDE=$withval],[MPI_INCLUDE=""])
dnl check that --with-mpi-include and --with-mpi-lib have been provided
if test -z "$MPILIB" ; then
if test "$PARALLEL_VALUE" = "yes" ; then
AC_MSG_ERROR([empty --with-mpi-lib options! MPI is
needed to run ISSM in
paralle!])
fi
else
if test -z "$MPI_INCLUDE" ; then
if test "$PARALLEL_VALUE" = "yes" ; then
AC_MSG_ERROR([empty --with-mpi-include
directory! MPI is needed to run
ISSM in paralle!])
fi
else
HAVE_MPI=yes
MPIINCL=-I"$MPI_INCLUDE/"
AC_DEFINE([_HAVE_MPI_],[1],[with Mpi in ISSM src])
AC_DEFINE([HAVE_MPI],[1],[with Mpi in ISSM src])
AC_SUBST([MPIINCL])
AC_SUBST([MPILIB])
fi
fi
AC_MSG_RESULT(done)
dnl Petsc directory and architecture
AC_ARG_WITH([petsc-dir],
AS_HELP_STRING([--with-petsc-dir = DIR],
[petsc root directory,
necessary for parallel build]),
[PETSC_ROOT=$withval],[PETSC_ROOT=""])
if test "$PARALLEL_VALUE" = "yes" ; then
if test "$PETSC_ROOT" = "" ; then
AC_MSG_ERROR([missing --with-petsc-dir argument for
parallel
compilation!])
fi
fi
AC_ARG_WITH([petsc-arch],
AS_HELP_STRING([--with-petsc-arch = DIR],
[petsc arch ,
necessary for parallel build]),
[PETSC_ARCH=$withval],[PETSC_ARCH=""])
if test "$PARALLEL_VALUE" = "yes" ; then
if test "$PETSC_ARCH" = "" ; then
AC_MSG_ERROR([missing --with-petsc-arch argument for
parallel
compilation!])
fi
fi
AC_MSG_CHECKING(for Petsc headers and libraries in $PETSC_ROOT for
architecture $PETSC_ARCH)
if test -d "$PETSC_ROOT"; then
if test -d "$PETSC_ROOT/bmake/$PETSC_ARCH"; then
PETSCINCL="-I$PETSC_ROOT/include -I$PETSC_ROOT/
-I$PETSC_ROOT/bmake/$PETSC_ARCH
-I$PETSC_ROOT/src/mat/impls/dense/mpi/plapack/"
case "${host_os}" in
*cygwin*)
PETSCLIB="-link
-LIBPATH:\"$PETSC_ROOT/lib/$PETSC_ARCH\" libpetscksp.lib
libpetscdm.lib libpetscmat.lib libpetscvec.lib libpetsc.lib
libpetscsnes.lib libpetscts.lib libmpiuni.lib"
;;
*linux*)
PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH
-lpetscksp -lpetscdm -lpetscmat
-lpetscvec -lpetsc -lpetscsnes -lpetscts"
;;
*darwin9.6.0*)
PETSCLIB="-L$PETSC_ROOT/lib/$PETSC_ARCH
-lpetscksp -lpetscdm -lpetscmat
-lpetscvec -lpetsc -lpetscsnes -lpetscts"
;;
esac
AC_DEFINE([_HAVE_PETSC_],[1],[with Petsc in ISSM src])
AC_SUBST([PETSCINCL])
AC_SUBST([PETSCLIB])
HAVE_PETSC=yes
else
HAVE_PETSC=no
fi
else
HAVE_PETSC=no
fi
if test $HAVE_PETSC = no; then
AC_MSG_ERROR([could not find petsc. user should specify
--with-petsc-dir
and --with-petsc-arch options. Petsc is needed to run ISSM!])
else
AC_MSG_RESULT($HAVE_PETSC)
fi
dnl: when running in serial mode, MPI must be ignored, and set to
internal
petsc mpiuni:
if test "$PARALLEL_VALUE" = "no" ; then
HAVE_MPI=yes
MPIINCL=-I"$PETSC_ROOT/include/mpiuni"
case "${host_os}" in
*cygwin*)
MPILIB="-link -LIBPATH:\"$PETSC_ROOT/lib/$PETSC_ARCH\"
libmpiuni.lib"
;;
*linux*)
MPILIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lmpiuni"
;;
*darwin9.6.0*)
MPILIB="-L$PETSC_ROOT/lib/$PETSC_ARCH -lmpiuni"
;;
esac
AC_DEFINE([_HAVE_MPI_],[1],[with Mpi in ISSM src])
AC_DEFINE([HAVE_MPI],[1],[with Mpi in ISSM src])
AC_SUBST([MPIINCL])
AC_SUBST([MPILIB])
fi
dnl Slepc directory
AC_ARG_WITH([slepc-dir],
AS_HELP_STRING([--with-slepc-dir = DIR],
[slepc root
directory]),
[SLEPC_ROOT=$withval],[SLEPC_ROOT=""])
AC_MSG_CHECKING(for Slepc headers and libraries in $SLEPC_ROOT)
if test -d "$SLEPC_ROOT"; then
dnl defaults
HAVE_SLEPC=yes
SLEPCINCL=-I"$SLEPC_ROOT/include"
SLEPCLIB=-L"$SLEPC_ROOT/lib/ -lslepc"
AC_DEFINE([_HAVE_SLEPC_],[1],[with Slepc in ISSM src])
AC_SUBST([SLEPCINCL])
AC_SUBST([SLEPCLIB])
else
HAVE_SLEPC=no
fi
AC_MSG_RESULT($HAVE_SLEPC)
dnl Scalapack directory
AC_ARG_WITH([scalapack-dir],
AS_HELP_STRING([--with-scalapack-dir = DIR],
[scalapack root
directory]),
[SCALAPACK_ROOT=$withval],[SCALAPACK_ROOT=""])
AC_MSG_CHECKING(for Scalapack headers and libraries in $SCALAPACK_ROOT)
if test -d "$SCALAPACK_ROOT"; then
dnl defaults
HAVE_SCALAPACK=yes
SCALAPACKLIB=-L"$SCALAPACK_ROOT/ -lscalapack"
AC_DEFINE([_HAVE_SCALAPACK_],[1],[with Scalapack in ISSM src])
AC_SUBST([SCALAPACKLIB])
else
HAVE_SCALAPACK=no
fi
AC_MSG_RESULT($HAVE_SCALAPACK)
dnl Blas-lapack directory
AC_ARG_WITH([blas-lapack-dir],
AS_HELP_STRING([--with-blas-lapack-dir = DIR],
[blas-lapack root
directory]),
[BLASLAPACK_ROOT=$withval],[BLASLAPACK_ROOT=""])
AC_MSG_CHECKING(for Blas and Lapack headers and libraries in
$BLASLAPACK_ROOT)
if test -d "$BLASLAPACK_ROOT"; then
dnl defaults
HAVE_BLASLAPACK=yes
BLASLAPACKINCL=""
dnl: branch on whether we are running on windows or linux.
case "${host_os}" in
*cygwin*)
BLASLAPACKLIB="-link -LIBPATH:\"$BLASLAPACK_ROOT\"
libf2cblas.lib
libf2clapack.lib"
;;
*linux*)
BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lfblas -lflapack"
;;
*darwin9.6.0*)
BLASLAPACKLIB=-L"$BLASLAPACK_ROOT -lfblas -lflapack"
;;
esac
AC_DEFINE([_HAVE_BLASLAPACK_],[1],[with blas lapack in ISSM
src])
AC_SUBST([BLASLAPACKLIB])
AC_SUBST([BLASLAPACKINCL])
else
HAVE_BLASLAPACK=no
fi
AC_MSG_RESULT($HAVE_BLASLAPACK)
dnl mkl directory
AC_ARG_WITH([mkl-dir],
AS_HELP_STRING([--with-mkl-dir = DIR],
[mkl root directory]),
[MKL_ROOT=$withval],[MKL_ROOT=""])
AC_MSG_CHECKING(for mkl headers and libraries in $MKL_ROOT)
if test -d "$MKL_ROOT"; then
dnl defaults
HAVE_MKL=yes
MKLINCL=""
MKLLIB=-L"$MKL_ROOT -lmkl_lapack -lmkl -lguide"
AC_DEFINE([_HAVE_MKL_],[1],[with mkl in ISSM src])
AC_SUBST([MKLLIB])
AC_SUBST([MKLINCL])
else
HAVE_MKL=no
fi
AC_MSG_RESULT($HAVE_MKL)
dnl Plapack directory
AC_ARG_WITH([plapack-dir],
AS_HELP_STRING([--with-plapack-dir = DIR],
[plapack root
directory]),
[PLAPACK_ROOT=$withval],[PLAPACK_ROOT=""])
AC_MSG_CHECKING(for Plapack headers and libraries in $PLAPACK_ROOT)
if test -d "$PLAPACK_ROOT"; then
dnl defaults
HAVE_PLAPACK=yes
PLAPACKINCL=-I"$PLAPACK_ROOT/INCLUDE"
PLAPACKLIB=-L"$PLAPACK_ROOT/ -lPLAPACK"
AC_DEFINE([_HAVE_PLAPACK_],[1],[with Plapack in ISSM src])
AC_SUBST([PLAPACKINCL])
AC_SUBST([PLAPACKLIB])
else
HAVE_PLAPACK=no
fi
AC_MSG_RESULT($HAVE_PLAPACK)
dnl Mumps directory
AC_ARG_WITH([mumps-dir],
AS_HELP_STRING([--with-mumps-dir = DIR],
[mumps root
directory]),
[MUMPS_ROOT=$withval],[MUMPS_ROOT=""])
AC_MSG_CHECKING(for Mumps headers and libraries in $MUMPS_ROOT)
if test -d "$MUMPS_ROOT"; then
dnl defaults
HAVE_MUMPS=yes
MUMPSINCL=-I"$MUMPS_ROOT/include"
MUMPSLIB=-L"$MUMPS_ROOT/lib -ldmumps -lcmumps -lpord"
AC_DEFINE([_HAVE_MUMPS_],[1],[with Mumps in ISSM src])
AC_SUBST([MUMPSINCL])
AC_SUBST([MUMPSLIB])
else
HAVE_MUMPS=no
fi
AC_MSG_RESULT($HAVE_MUMPS)
dnl Blacs directory
AC_ARG_WITH([blacs-dir],
AS_HELP_STRING([--with-blacs-dir = DIR],
[blacs root
directory]),
[BLACS_ROOT=$withval],[BLACS_ROOT=""])
AC_MSG_CHECKING(for Blacs headers and libraries in $BLACS_ROOT)
if test -d "$BLACS_ROOT"; then
dnl defaults
HAVE_BLACS=yes
BLACSINCL=""
BLACSLIB=-L"$BLACS_ROOT/ -lblacs"
AC_DEFINE([_HAVE_BLACS_],[1],[with Blacs in ISSM src])
AC_SUBST([BLACSINCL])
AC_SUBST([BLACSLIB])
else
HAVE_BLACS=no
fi
AC_MSG_RESULT($HAVE_BLACS)
dnl math library option
AC_MSG_CHECKING(for math library...)
AC_ARG_WITH([math-lib],
AS_HELP_STRING([--with-math-lib = otions],
[math options, for ex:
"/usr/lib/libm.a]),
[MATH_LIB=$withval],[MATH_LIB=""])
dnl check that --with-math-lib may have been provided
if test -n "$MATH_LIB" ; then
HAVE_MATH=yes
MATHLIB="$MATH_LIB"
AC_DEFINE([_HAVE_MATH_],[1],[with MATH in ISSM src])
AC_SUBST([MATHLIB])
fi
AC_MSG_RESULT(done)
dnl fortran library option
AC_MSG_CHECKING(for fortran library...)
AC_ARG_WITH([fortran-lib],
AS_HELP_STRING([--with-fortran-lib = options],
[fortran options, for
ex: "/usr/lib/gfortran.a]),
[FORTRAN_LIB=$withval],[FORTRAN_LIB=""])
dnl check that --with-fortran-lib may have been provided
if test -n "$FORTRAN_LIB" ; then
HAVE_FORTRAN=yes
FORTRANLIB="$FORTRAN_LIB"
AC_DEFINE([_HAVE_FORTRAN_],[1],[with FORTRAN in ISSM src])
AC_SUBST([FORTRANLIB])
fi
AC_MSG_RESULT(done)
dnl graphics library option
AC_MSG_CHECKING(for graphics library...)
AC_ARG_WITH([graphics-lib],
AS_HELP_STRING([--with-graphics-lib = options],
[graphics options, for
ex: "/usr/X11/lib/libX11.a]),
[GRAPHICS_LIB=$withval],[GRAPHICS_LIB=""])
dnl check that --with-graphics-lib may have been provided
if test -n "$GRAPHICS_LIB" ; then
HAVE_GRAPHICS=yes
GRAPHICSLIB="$GRAPHICS_LIB"
AC_DEFINE([_HAVE_GRAPHICS_],[1],[with GRAPHICS in ISSM src])
AC_SUBST([GRAPHICSLIB])
fi
AC_MSG_RESULT(done)
dnl vendor?
AC_ARG_WITH([vendor],
AS_HELP_STRING([--with-vendor = VENDOR], [vendor
name, ex: intel]),
[VENDOR=$withval],[VENDOR=""])
AC_MSG_CHECKING(for vendor compilers )
if test -n "$VENDOR"; then
if test $VENDOR = intel; then
export CC=icl
export CXX=icl
export CXXFLAGS="-DWIN32 -D_INTEL_"
else
AC_MSG_ERROR([unknow compiler vendor!])
fi
fi
])
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