[Avogadro-Discuss] xyz to gzmat

2013-03-15 Thread Ibrahim (Ibrahim Awad) Awad
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Re: [Avogadro-Discuss] building slab with avogadro

2013-03-15 Thread Geoffrey Hutchison
> I am trying to build 101 surface of anatase TiO2. > I used 1x1 layer of TiO2. I used the coordinates in quantum espresso input. > The structure looks clumsy. > I realized some edge oxygen atoms are duplicated. While I haven't tested it with the slab builder, there is a Quantum Espresso input b

Re: [Avogadro-Discuss] building slab with avogadro

2013-03-15 Thread Rupashree Shyama Ray
I am trying to build 101 surface of anatase TiO2. I used 1x1 layer of TiO2. I used the coordinates in quantum espresso input. The structure looks clumsy. I realized some edge oxygen atoms are duplicated. Also learnt from discussions one need to remove deplicate atoms. On Fri, Mar 15, 2013 at 6:

Re: [Avogadro-Discuss] building slab with avogadro

2013-03-15 Thread David Lonie
On Thu, Mar 14, 2013 at 5:51 PM, Rupashree Shyama Ray wrote: > Hi, > > While building input files for quantum espresso, certain atoms are > duplicated in avogadro. > Can anyone suggest how to deal with the problem within avogadro? > It's terrible to do a trial and error to remove certain edge atom