Re: [Avogadro-Discuss] some help for two avogadro extensions and a question on beta orbitals

2016-12-28 Thread Geoffrey Hutchison
>> BTW, as part of the 2.0 effort, I'm adding support for Python scripts >> ("workflows") that will get the active selection. In principal, you could >> also improve the Gaussian input generator to read out the selection. If >> you're interested, I can share some branches with you. > > This is

Re: [Avogadro-Discuss] [Avogadro-devel] Workflow Scripts (for Avo2)

2016-12-28 Thread Gary Kedziora
Hi Geoff, Have you looked at pymatgen? It has a lot of useful features for crystal structures and some also for molecules as well. Gary On Wed, Dec 28, 2016 at 11:26 AM, Geoffrey Hutchison < geoff.hutchi...@gmail.com> wrote: > Hi, > > I'm pretty excited that we have an initial draft of (python

Re: [Avogadro-Discuss] [Avogadro-devel] Workflow Scripts (for Avo2)

2016-12-28 Thread Marcus D. Hanwell
On Wed, Dec 28, 2016 at 3:04 PM, Gary Kedziora wrote: > Have you looked at pymatgen? It has a lot of useful features for crystal > structures and some also for molecules as well. > > I have been looking at pymatgen, but hadn't thought about it in this context. We should take another look at it,

Re: [Avogadro-Discuss] [Avogadro-devel] Workflow Scripts (for Avo2)

2016-12-28 Thread Geoffrey Hutchison
> Have you looked at pymatgen? It has a lot of useful features for crystal > structures and some also for molecules as well. Great idea. The pieces aren't fully in place, but there will be a system for workflow plugins to require dependencies. Do you have any first use cases, e.g., "insert str