[Avogadro-Discuss] slab heterojunction

2013-11-23 Thread Sara Yzdn
Hi, I have made two slabs of different crystal structures in avogadro and I have saved them in different files. I want to make a heterjunction with these two slabs or at least put these two slabs aside in one file. Please let me know if it is possible in avogadro. Thanks in advance Sara

[Avogadro-Discuss] Saturating with hydrogen

2013-10-07 Thread Sara Yzdn
Hi, I am trying to saturate the dangling bonds on a slab by hydrogens. in build-->add hydrgen, the hydrogen is only added to one of the atoms and then clicking on the others do not work. Is there any other ways to do it? Regards, --

[Avogadro-Discuss] Saturating with hydrogen

2013-10-05 Thread Sara Yzdn
Hi, I am trying to saturate the dangling bonds on a slab by hydrogens. in build-->add hydrgen, the hydrogen is only added to one of the atoms and then clicking on the others do not work. Is there any other ways to do it? Regards, --

[Avogadro-Discuss] Delete some atoms in a supercell

2013-10-01 Thread Sara Yzdn
Hi, I have generated a supercell in avogadro. I want to remove some of the atoms. Is there a way I can remove them by the aid of the gui and not guessing their position in the Cartesian built? Thanks in advance. Regards, Sara ---

[Avogadro-Discuss] Crystallography-Extension

2013-09-13 Thread Sara Yzdn
Hello, I have a question about crystallography-extention. If it has already been answered, I apologize and would be grateful if you redirect me to the existing link. I have installed avogadro 1.0.3 x86_64 and I need crystallography extension, I installed avogadro-devel as well. However, I don't h