om: briji...@gmail.com
> > Sent: 08/14/12 08:51 AM
> > To: Bangalore Python Users Group - India
> > Subject: Re: [BangPypers] executing shell commands through python script
> >
> > try this. http://docs.python.org/library/commands.html Regards, Brijith
> > P On T
4/12 08:51 AM
> To: Bangalore Python Users Group - India
> Subject: Re: [BangPypers] executing shell commands through python script
>
> try this. http://docs.python.org/library/commands.html Regards, Brijith
> P On Tue, Aug 14, 2012 at 3:15 AM, Vikram K wrote:
> > i am able to run the
I use subprocess.call to execute shell commands. Take a look at this
http://docs.python.org/library/subprocess.html
- Original Message -
From: briji...@gmail.com
Sent: 08/14/12 08:51 AM
To: Bangalore Python Users Group - India
Subject: Re: [BangPypers] executing shell commands through
try this. http://docs.python.org/library/commands.html
Regards,
Brijith P
On Tue, Aug 14, 2012 at 3:15 AM, Vikram K wrote:
> i am able to run the following command from the shell (i am working on Mac
> Snow Leopard):
>
> cgatools evidence2sam --beta --evidence-dnbs
> evidenceDnbs-chr11-GS1
i am able to run the following command from the shell (i am working on Mac
Snow Leopard):
cgatools evidence2sam --beta --evidence-dnbs
evidenceDnbs-chr11-GS10026-ASM-T1.tsv.bz2 --reference build36.crr
--output CGI_10026_CLL046_chr11_NUMA1_N.sam --extract-genomic-region
chr11,71391559,71469221
