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These are the values that seem to work for the gpr files that we
have. Data Header = "Block"\t"Column".* strip quotes = True mysql> select p.name, s.value from PluginConfigurationValues as p, StringValues as s where s.id=p.value_id and p.pluginconfiguration_id=2; +-----------------------------+-----------------------+ | name | value | +-----------------------------+-----------------------+ | blockColumnMapping | \Block\ | | columnColumnMapping | \Column\ | | dataSplitterRegexp | \t | | propertyMapping.bgPixels | \B Pixels\ | | propertyMapping.ch1BgMean | \B635 Mean\ | | propertyMapping.ch1BgMedian | \B635 Median\ | | propertyMapping.ch1BgSd | \B635 SD\ | | propertyMapping.ch1FgMean | \F635 Mean\ | | propertyMapping.ch1FgMedian | \F635 Median\ | | propertyMapping.ch1FgSd | \F635 SD\ | | propertyMapping.ch1PercSat | \F635 % Sat.\ | | propertyMapping.ch1PercSd1 | \% > B635+1SD\ | | propertyMapping.ch1PercSd2 | \% > B635+2SD\ | | propertyMapping.ch2BgMean | \B532 Mean\ | | propertyMapping.ch2BgMedian | \B532 Median\ | | propertyMapping.ch2BgSd | \B532 SD\ | | propertyMapping.ch2FgMean | \F532 Mean\ | | propertyMapping.ch2FgMedian | \F532 Median\ | | propertyMapping.ch2FgSd | \F532 SD\ | | propertyMapping.ch2PercSat | \F532 % Sat.\ | | propertyMapping.ch2PercSd1 | \% > B532+1SD\ | | propertyMapping.ch2PercSd2 | \% > B532+2SD\ | | propertyMapping.fgPixels | \F Pixels\ | | propertyMapping.flags | \Flags\ | | propertyMapping.ratiosSd | \Ratios SD (635/532)\ | | propertyMapping.rgnRatio | \Rgn Ratio (635/532)\ | | rawDataType | genepix | | reporterIdColumnMapping | \ID\ | | rowColumnMapping | \Row\ | | xColumnMapping | \X\ | | yColumnMapping | \Y\ | +-----------------------------+-----------------------+ 31 rows in set (0.01 sec) -keith From: Pablo Lemos Ochandio <[EMAIL PROTECTED]>  Re: GenePix Alternitives? 2006-08-02 02:32 Hi Everybody!! I have a problem (again!) with a .gpr file. I have configure� a RAWdata importer to parser GenePix .gpr file. The plugin configuration is: Block \Block\ Column \Column\ Data footer Data header Block\tColumn Data splitter \t Header ATF\t1.0 Ignore Max data columns MetaGridX MetaGridY Min data columns CV Background pixels Channel 1 background mean Channel 1 background median Channel 1 background standard deviation Channel 1 foreground mean Channel 1 foreground median Channel 1 foreground standard deviation Percent saturated pixels Percent pixels within 1 standard deviation Percent pixels within 2 standard deviations Channel 2 background mean Channel 2 background median Channel 2 background standard deviation Channel 2 foreground mean Channel 2 foreground median Channel 2 foreground standard deviation Percent saturated pixels Percent pixels within 1 standard deviation Percent pixels within 2 standard deviations Spot diameter Foreground pixels Flags M value Standard deviation of ratios Rgn R2 Rgn ratio Raw data type genepix Reporter ID \ID\ Row Remove quotes true X Y I minimize the file to some columns (Block, Column, ID) to try to debug the plugin. Base2 give me the next error advise: Error: File 'File[id=31; name=prueba9.gpr]' cannot be imported by this plugin. InvalidDataException: File 'File[id=31; name=prueba9.gpr]' cannot be imported by this plugin. The .gpr file that im using is: ATF��� 1.0 31��� 1 Type=GenePix Results 3��� DateTime=2005/02/26 13:51:20��� Settings=1.26.10.gps��� GalFile=Impresion3gal27enero04.gal��� PixelSize=10��� "Wavelengths=635��� 532"��� "ImageFiles=1.26.10_750_760 24h-4.tif 2��� 1.26.10_750_760 24h-4.tif 3"��� NormalizationMethod=None��� "NormalizationFactors=1��� 1"��� JpegImage=1.26.10.jpg��� StdDev=Type 1��� RatioFormulations=W1/W2 (635/532)��� Barcode=��� BackgroundSubtraction=LocalFeature��� ImageOrigin=1640, 4240 JpegOrigin=1640, 4240 Creator=GenePix Pro 4.1.1.4 Scanner=GenePix 4000B [92593] FocusPosition=5 Temperature=27.79 LinesAveraged=2 Comment= "PMTGain=750��� 760" "ScanPower=100��� 100" "LaserPower=3.54��� 1.82" "LaserOnTime=6532��� 6557" "Filters=��� " ScanRegion=164,424,2000,5952 Supplier=BioRobotics ArrayerSoftwareName=TAS Application Suite (MicroGrid II) ArrayerSoftwareVersion=2.4.0.2��� ��� Block��� Column��� ID 1��� 1��� cal2 1��� 2��� cal2 Could someone help me? Could someone send me a test .gpr file or a valid configuration plugin? Thanks a lot ------------------------------------------------------------------------------------------------------------------------------Pablo Lemos Ochandio - Analista de Sistemas FisicosInstituto Valenciano de Investigaciones Agrarias (IVIA)Crta Moncada - Naquera Km 4.546113 - MoncadaValenciaSpain |
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