During the installation of Tmev there is a step to create a plugin by clicking
the 'New' button on the 'Administrate -> Plugins -> Definitions' page. After
this step we cannot see any new Mev plugin in Definition page. Where we can
find TDMS exporter plugin to verify its permissions options?.
By other side, when we try to launch Mev in the "Tools" column when viewing
bioassay sets of an experiment, there is a file with extension ...TDMS.TXT that
it`s suppose to be save in raw data, but when we do browse, there isn't any
file with this extension in raw data folder.
Regards
Daniel
Daniel Octavio Palenzuela Gardon wrote:
> I have logged as postgres the default administrator of BASE, which
> suppose to have full access. Do I have to create a new user??
>
No, you don't need another user. The root user should have full access.
Are you sure that you are using the correct account? Have you modified
the permissions for the TDMS exporter plug-in? It should be using the
'no permissions' option.
From: Daniel Octavio Palenzuela Gardon
Sent: Thursday, September 24, 2009 4:59 PM
To: 'basedb-users@lists.sourceforge.net'
Subject: RE: Can't export data to Tmev
I have logged as postgres the default administrator of BASE, which suppose to
have full access. Do I have to create a new user??
Regards
Daniel
Daniel Octavio Palenzuela Gardon wrote:
> Hi all,
>
>
>
> We installed Tmev pluging in BASE and we are trying to export data to
> Mev but we receive below error. Could someone give us a help to solve
> this problem.??
It seems like the logged in user doesn't have permission to access the
"raw data" directory.
/Nicklas
From: Daniel Octavio Palenzuela Gardon
Sent: Wednesday, September 23, 2009 12:33 PM
To: 'basedb-users@lists.sourceforge.net'
Subject: Can't export data to Tmev
Hi all,
We installed Tmev pluging in BASE and we are trying to export data to Mev but
we receive below error. Could someone give us a help to solve this problem.??
Regards
Daniel
Error:
Permission denied: Not allowed to read Directory[id=501; name=raw data]
Show
Permission denied: Not allowed to read Directory[id=501; name=raw data]
net.sf.basedb.core.PermissionDeniedException: Permission denied: Not allowed
to read Directory[id=501; name=raw data]
...at net.sf.basedb.core.BasicItem.checkPermission(BasicItem.java:110)
...at net.sf.basedb.core.DbControl.getItem(DbControl.java:824)
...at net.sf.basedb.core.DbControl.loadItem(DbControl.java:709)
...at net.sf.basedb.core.Directory.getById(Directory.java:197)
...at net.sf.basedb.core.Directory.getByPath(Directory.java:217)
...at net.sf.basedb.core.File.getByPath(File.java:180)
...at
net.sf.basedb.core.plugin.AbstractExporterPlugin.pathCanBeUsed(AbstractExporterPlugin.java:363)
...at
net.sf.basedb.mev.plugin.TdmsExporterPlugin.configure(TdmsExporterPlugin.java:163)
...at
net.sf.basedb.core.PluginConfigurationRequest.invoke(PluginConfigurationRequest.java:114)
...at org.apache.jsp.common.plugin.index_jsp._jspService(index_jsp.java:493)
...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
...at
org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:374)
...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:342)
...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:267)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
...at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
...at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
...at
net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:70)
...at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
...at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
...at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
...at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
...at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
...at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
...at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
...at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:849)
...at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
...at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:454)
...at java.lang.Thread.run(Unknown Source)
------------------------------------------------------------------------------
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