Re: [base] reporters on MergeBioAssay plug-in

2011-05-20 Thread Nicklas Nordborg
Thanks for the stacktrace. It seems to be a bug in the Base1PluginExecuter plug-in. It is trying to remap the raw data associations after the bioassays have been merged. Obviously, this is not possible if there is no raw data stored in the first place. The Base1PluginExecuter need to be fixed w

Re: [base] reporters on MergeBioAssay plug-in

2011-05-20 Thread Irina 264
Addition, from "Parameters" tab: Job parameters -- Ratio annotation type

Re: [base] reporters on MergeBioAssay plug-in

2011-05-20 Thread Irina 264
from "Stack trace" tab: View job -- Run plugin: Base1PluginExecuter

Re: [base] reporters on MergeBioAssay plug-in

2011-05-20 Thread Nicklas Nordborg
On 2011-05-20 09:04, Irina 264 wrote: > Hi Nicklas, > > Thanks for the quick reply. > > I run RMAExpress with Affy data, then I done filtering with equal size > of arrays afterwards. > > Then I run MergeBioAssay (with Base1pluginExecuter) to find average > between replicates (grouping assays by con

Re: [base] reporters on MergeBioAssay plug-in

2011-05-20 Thread Irina 264
Hi Nicklas, Thanks for the quick reply. I run RMAExpress with Affy data, then I done filtering with equal size of arrays afterwards. Then I run MergeBioAssay (with Base1pluginExecuter) to find average between replicates (grouping assays by control and treatment with method ‘arithmetic mea