Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-24 Thread Nicklas Nordborg
Micha Bayer wrote: > The Raw Data Type also needs to be made mandatory as the import will > fail without it (that seems to go for all cases, file supplied or > not). No, it is not always needed. It depends on the platform you are using. For example, file-only platforms like Affymetrix doesn't ne

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-24 Thread Micha Bayer
xt. 2309 Fax +44(0)1382 562426 http://www.scri.ac.uk/staff/michabayer == > -Original Message- > From: Nicklas Nordborg [mailto:[EMAIL PROTECTED] > Sent: 21 November 2008 19:33 > To: BASE ML > Subject: Re: [base] problem attaching files to raw

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Nicklas Nordborg
Jari Häkkinen wrote: > I have not encountered any problems with attaching files earlier. I > decided to play around with partially filled import files. I succeeded > in creating a file that fails to attach files even though the importer > reports success. BASE 2.8.4 and my 2.9pre test version bo

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Jari Häkkinen
I have not encountered any problems with attaching files earlier. I decided to play around with partially filled import files. I succeeded in creating a file that fails to attach files even though the importer reports success. BASE 2.8.4 and my 2.9pre test version both fails but the resolution

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Micha Bayer
No, still no joy. > Are the raw data files "visible" to the plug-in? If you upload the > files > with ftp they are not automatically assigned to a project. I uploaded them with HTTP, and they have definitely been assigned to the project. > You need to > set the parameter defining how the plug-i

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Jari Häkkinen
Are the raw data files "visible" to the plug-in? If you upload the files with ftp they are not automatically assigned to a project. You need to set the parameter defining how the plug-in should find existing items referenced in the file. If this is not the problem, can you try to only map the f

[base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Micha Bayer
Hello again, I can't get the raw bioassay batch importer to attach actual file objects to the raw bioassays I am importing. I have - provided a data column with file names in my data batch import file - mapped this column to the File property in the import config - provided a path to the data dir