Dear Perl Users
I have hundreds of input files, named as geneName_paml_formated.mlc
In each file, there are some contents similar as follows:
w (dN/dS) for branches: 0.00010 1.07967 145.81217 0.00010
dN dS for each branch
branch t N S dN/dS dN dS N*dN S*dS
Dear Shaji
Yes, that is what I want for the output file.
Best
Li
From: Shaji Kalidasan [shajiin...@yahoo.com]
Sent: Thursday, November 07, 2013 4:30 AM
To: Wang, Li; beginners@perl.org
Subject: Re: please help correct my script
Dear Wang,
It is actually writing
Kalidasan [shajiin...@yahoo.com]
Sent: Thursday, November 07, 2013 4:30 AM
To: Wang, Li; beginners@perl.org
Subject: Re: please help correct my script
Dear Wang,
It is actually writing the desired info to the output file summaryOFdNdS.txt.
Here is the content of the output file. In my case, I gave
Dear List members
I have three columns of a table. The example is as follows:
DBS R^2 genename
801 0.27807486057281494 POPTR_0002s00200
19031.0 POPTR_0002s00200
11030.25852271914482117 POPTR_0002s00200
32150.03134157508611679 POPTR_0002s00200
2415
From: Jim Gibson [jimsgib...@gmail.com]
Sent: Wednesday, August 29, 2012 12:28 AM
To: perl list
Subject: Re: how to handle two input files
On Aug 28, 2012, at 9:01 PM, Wang, Li wrote:
Dear All
[problem description snipped]
My script is as follows. And usage
Hi, John
With the modified script, I got it work, but get some warnings when running
through one file.
Use of uninitialized value in numeric ge (=) at searchAndPrint.pl line 50,
FST line 3417.
Use of uninitialized value in numeric gt () at searchAndPrint.pl line 54,
FST line 3417.
Use of
Dear All
I have two input files. I want to search an element of File1 in File 2. If the
condition matched, print out something.
File1:
scaffold_1_541600 0.856102487445412 0.295040551475357
0.795878312070658 312
The element used to search is 541600,
File2:
scaffold_1
From: John W. Krahn [jwkr...@shaw.ca]
Sent: Saturday, August 25, 2012 2:28 PM
To: Perl Beginners
Subject: Re: a condition
Wang, Li wrote:
Dear All
Hello,
I have an array of a series of strinngs. I want to set up a
condition in which all the scalers in the array
Hi, Jim
Thanks very much!
It works now!
All the best
Li
From: Jim Gibson [jimsgib...@gmail.com]
Sent: Sunday, August 26, 2012 12:13 PM
To: Perl Beginners
Subject: Re: a condition
On Aug 26, 2012, at 10:03 AM, Wang, Li wrote:
Dear All
Thanks very
Dear All
I have an array of a series of strinngs. I want to set up a condition in which
all the scalers in the array are not the same.
For example
AB AB AB AB AB (delete the array)
AB AC AB AB AB (Keep the array)
AB AC AD AB AB (keep)
Sorry for the naive questions!
Best wishes
Li
Dear list members
I am a very beginner of perl programming.
I am trying to write a script to search all scalers of one array (geneIDFile)
in another file (annotationFile). If it is found and matched, output the whole
line of the annotation file.
My script is as follows. It turns out not
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