John W. Krahn wrote:
Pedro Antonio Reche wrote:
Hi, I am interested in parsing the file at the bottom of this e-mail in
order to extract the string between following /product=,
/protein_id=, /db_xref= and /translation=, and that for each of the
segment separated by the string CDS.
-Original Message-
From: Pedro Antonio Reche [mailto:[EMAIL PROTECTED]]
Sent: Tuesday, December 17, 2002 7:22 PM
To: [EMAIL PROTECTED]
Subject: help parsing file
... I am not
please with it, as it generates an empty element in the hash from the
header of the file
John Krahn's
Bob Showalter wrote:
-Original Message-
From: Pedro Antonio Reche [mailto:[EMAIL PROTECTED]]
Sent: Tuesday, December 17, 2002 7:22 PM
To: [EMAIL PROTECTED]
Subject: help parsing file
... I am not
please with it, as it generates an empty element in the hash from the
Pedro Antonio Reche wrote:
Hi, I am interested in parsing the file at the bottom of this e-mail in
order to extract the string between following /product=,
/protein_id=, /db_xref= and /translation=, and that for each of the
segment separated by the string CDS. The ouptput for the example
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
Sent: Friday, April 19, 2002 5:37 PM
To: [EMAIL PROTECTED]
Subject: Re: help parsing file
On Friday, April 19, 2002, at 02:17 , Bob Showalter wrote:
[..]
On Friday, April 19, 2002, at 12:29 , Pedro A Reche Gallardo
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
speaking of which - how DO we improve the quality of the problem
specs - both amongst beginners and 'product managers' - the former
at least seem open to learning while the latter.
For the former is there an acceptable use
On Monday, April 22, 2002, at 08:23 , Jackson, Harry wrote:
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
speaking of which - how DO we improve the quality of the problem
specs - both amongst beginners and 'product managers' - the former
at least seem open to learning
On Monday, April 22, 2002, at 10:01 , Timothy Johnson wrote:
Funny you should mention it. My product manager just requested blood
from a
stone two weeks ago. Now he's threatening to outsource it...
warning to those new to perl - DO NOT TRY THIS.
These are Paid Professionals Using the
You could try a variation of this:
use strict;
open(OUTFILE,parse.log);
open(INFILE,myfile.txt);
while(INFILE){
if($_ =~ /^/){ #If it starts with
$_ .= INFILE; #add the next line to $_
print OUTFILE $_; #and print it.
}
}
-Original Message-
From:
On Friday, April 19, 2002, at 12:29 , Pedro A Reche Gallardo wrote:
HI, I have a file that it could be devided in set of lines, each set
startingi with a line that has the symbol. Of everyset of lines, I
am trying to print only the line that contain the symbol and the
next line. Please
Hi Drieux, thanks a lot for the help. Your program is working very well. My
best wishes for you.
Pedro
***
PEDRO A. RECHE , pHDTL: 617 632 3824
Dana-Farber Cancer Institute, FX: 617 632 4569
Harvard Medical School,
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
Sent: Friday, April 19, 2002 4:55 PM
To: [EMAIL PROTECTED]
Subject: Re: help parsing file
On Friday, April 19, 2002, at 12:29 , Pedro A Reche Gallardo wrote:
HI, I have a file that it could be devided in set
]'
Subject: RE: help parsing file
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
Sent: Friday, April 19, 2002 4:55 PM
To: [EMAIL PROTECTED]
Subject: Re: help parsing file
On Friday, April 19, 2002, at 12:29 , Pedro A Reche Gallardo wrote:
HI, I have a file
On Friday, April 19, 2002, at 02:17 , Bob Showalter wrote:
[..]
On Friday, April 19, 2002, at 12:29 , Pedro A Reche Gallardo wrote:
I am trying to print only the line that contain the symbol and the
next line.
Bob, I will defer to Pedro on this - my reading had been
that given
On Friday, April 19, 2002, at 02:13 , Timothy Johnson wrote:
In that case, you could always change
### my $nextLine = FH;
to
###my $nextLine = FH unless $nextline =~ /^$prefix/;
Contract negotiable
I'm actually having problems getting that to work...
File
Actually, yeah, spoke too soon.
-Original Message-
From: drieux [mailto:[EMAIL PROTECTED]]
Sent: Friday, April 19, 2002 2:52 PM
To: [EMAIL PROTECTED]
Subject: Re: help parsing file
On Friday, April 19, 2002, at 02:13 , Timothy Johnson wrote:
In that case, you could always change
On Apr 19, drieux said:
### while(FH) {
### if( /^$prefix/ ) {
### print $_;
### my $nextLine = $_;
### while ( $nextLine =~ /^$prefix/ ){
### $nextLine = FH;
### print $nextLine;
### }
### }
### } # end while
I would follow this
Timothy Johnson wrote:
In that case, you could always change
###my $nextLine = FH;
to
###my $nextLine = FH unless $nextline =~ /^$prefix/;
That won't work because the $nextLine in $nextLine =~ /^$prefix/ is a
global variable and the $nextLine in my $nextLine =
On Friday, April 19, 2002, at 03:09 , Jeff 'japhy' Pinyan wrote:
[..]
First, I'd use a regex trick of //g in scalar context, and /^/m.
while (FH) {
next unless /^$prefix/;
$_ .= FH while /^$prefix/gm;
print;
}
I'm not sure I understand the 'exit' strategy here.
assume the
-- Forwarded message --
Date: Fri, 19 Apr 2002 19:06:30 -0400 (EDT)
From: Jeff 'japhy' Pinyan [EMAIL PROTECTED]
Reply-To: [EMAIL PROTECTED]
To: drieux [EMAIL PROTECTED]
Subject: Re: B/C - Re: help parsing file
On Apr 19, drieux said:
while (FH) {
next unless /^$prefix
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