Re: extract uniprot flatfile

2005-03-07 Thread Gretar Mar Hreggvidsson
Hi Have you looked at Bioperl (www.bioperl.org)? It is goldmine of tools for bioinformatics tasks. Correct me if I'm wrong but do not the Swiss-Prot and UniProt have the same dataformat? You should therefore be able to use something like: $stream = Bio::SeqIO->new(-file => $filename, -format =>

extract uniprot flatfile

2005-03-07 Thread SG Edwards
Hi, I am writing a perl program that will extract data from a UniProt (this is a protein database!) flatfile so that I can automatically put data into my PostgreSQL database. I am taking out name, protein ID number, references etc from the file. Does anyone know if there is a script available