Re: [Bioc-devel] BioC question

2013-02-06 Thread Dan Tenenbaum
On Wed, Feb 6, 2013 at 10:04 AM, Thomas Sandmann sandmann.tho...@gene.com wrote: Dear BioC developers, I upgraded to R 3.0.0 on my Mac (10.6.8) to make my gCMAP package ready for the next BioC release. Afterward, I reinstalled all the required BioC packages using biocLite. My package

[Bioc-devel] [GenomicFeatures] no pkgName found. makeTxDbPackage() called after txdb created from GFF3 file

2013-02-06 Thread Tengfei Yin
Dear all, I am trying to build a txdb object from gff3 for soybean data and try to make it a package. Code used like this gmax189 - makeTranscriptDbFromGFF(~/Gmax_189_gene_exons.gff3, format = gff3, species = Glycine max,