Hi,
I discovered the following problem in the geno() elements of the VCF object
when I load multiple regions from a .vcf file:
## Correct
> tmp = readVcf(system.file("extdata", "chr22.vcf.gz",
> package="VariantAnnotation"), "hg19")[1:10]
> geno(tmp)$GT
HG00096 HG00097 HG00099 HG0010
Hi Moritz,
Thanks for the bug report and suggested fix. The patch has been applied
to 1.4.10 in release and 1.5.42 in devel.
Valerie
On 03/05/2013 07:05 AM, Moritz Gerstung wrote:
Hi,
I discovered the following problem in the geno() elements of the VCF object
when I load multiple regions
I'm having a similar problem with my package, CoGAPS, which Is giving a warning
for .path.package that does not appear to be anywhere in my code, nor does it
depend on Biobase. Any suggestions would be greatly appreciated!
Elana
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On Tue, Mar 5, 2013 at 1:29 PM, Elana Fertig wrote:
> I'm having a similar problem with my package, CoGAPS, which Is giving a
> warning for .path.package that does not appear to be anywhere in my code, nor
> does it depend on Biobase. Any suggestions would be greatly appreciated!
This means a
