Is there any central, web-accessible location for the download statistics
for all of the Bioconductor packages? I know each packages web-page has a
link to a page with all of the download statistics, but was wondering if
there was an easy way to get access to all of the statistics for given
package
On Fri, Apr 19, 2013 at 8:51 AM, Robert M. Flight wrote:
> Is there any central, web-accessible location for the download statistics
> for all of the Bioconductor packages? I know each packages web-page has a
> link to a page with all of the download statistics, but was wondering if
> there was an
Hi all,
There is a non-exported function in VariantAnnotation called
.toDNAStringSetList that converts a vector of comma-separated character
strings to a DNAStringSetList. I'd like to use this code in a package
I'm working on. Would it make sense to export this from Biostrings? If
not, wha
why not just use
VariantAnnotation:::.toDNAStringSetList()
?
On Fri, Apr 19, 2013 at 11:55 AM, Stephanie M. Gogarten <
sdmor...@u.washington.edu> wrote:
> Hi all,
>
> There is a non-exported function in VariantAnnotation called
> .toDNAStringSetList that converts a vector of comma-separated ch
Hi Stephanie,
On 04/19/2013 11:55 AM, Stephanie M. Gogarten wrote:
Hi all,
There is a non-exported function in VariantAnnotation called
.toDNAStringSetList that converts a vector of comma-separated character
strings to a DNAStringSetList. I'd like to use this code in a package
I'm working on.
On Fri, Apr 19, 2013 at 12:35 PM, Hervé Pagès wrote:
>
> PS: Calling strsplit() with 'fixed=TRUE' makes it about 4x faster :-)
>
I've been doing it that way for so long that I forgot why I started. The
other salutary effect is that '.' splits where you expect it to when
fixed=TRUE.
Thanks for
On 04/19/2013 12:35 PM, Hervé Pagès wrote:
[...]
> comma_sep_strings <- c("AA,TT", "ACGT", "", "TT,A,,TAG")
> DNAStringSetList(strsplit(comma_sep_strings, ",", fixed=TRUE))
Error in strsplit(comma_sep_strings, ",") : non-character argument
Some copy/paste mic-mac on my end, sorry. The
Greetings,
I'm kicking tires on the new DESeq2 package -- very nicely done, btw,
thanks!.
I have a quick question about the use of the variance and rlog
transformations.
It seems that both functions prefer to receive a DESeqDataSet with a design
set to formula(~ 1). I say "prefer" because while
Thanks, Herve!
To answer Tim's question (though it has become irrelevant after Herve's
solution): because I'd rather not add VariantAnnotation to my dependency
tree for only a couple of lines of code. It also seemed like the sort
of thing that should be possible with a DNAStringSetList constr
