Re: [Bioc-devel] ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class

2013-05-07 Thread Renaud Gaujoux
Argh! Namespace and union class: a nice explosive recipe... Thanks Martin for the example reduction! I will forward/continue this to r-devel. Renaud On 7 May 2013 19:55, Martin Morgan wrote: > On 05/07/2013 04:04 AM, Renaud Gaujoux wrote: > >> Hi, >> >> I am getting an error when calling an S

Re: [Bioc-devel] ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class

2013-05-07 Thread Martin Morgan
On 05/07/2013 04:04 AM, Renaud Gaujoux wrote: Hi, I am getting an error when calling an S4 method, which is defined for a union class that includes ExpressionSet, on a LumiBatch object: The error prototype is as follows: - 'A' is Union of 'B' and 'C' - 'D' extends 'C' - a method myfun() exists

[Bioc-devel] ExpressionSet and LumiBatch: inheritance problem in S4 methods for union class

2013-05-07 Thread Renaud Gaujoux
Hi, I am getting an error when calling an S4 method, which is defined for a union class that includes ExpressionSet, on a LumiBatch object: The error prototype is as follows: - 'A' is Union of 'B' and 'C' - 'D' extends 'C' - a method myfun() exists for class 'A' => myfun('C') works but not myfun