> getChipInfo(rownames(stage3expression), species = "Human")
$chipVersion
[1] "HumanHT12_V3_0_R3_11283641_A" "HumanWG6_V3_0_R3_11282955_A"
$species
[1] "Human"
$IDType
[1] "Array_Address_Id" "Array_Address_Id"
$chipProbeNumber
[1] 48803
$inputProbeNumber
[1] 48803
$matchedProbeNumber
[1] 4880
Thanks, I've exported it now from BiocGenerics. It shouldn't cause a
duplication.
Michael
On Mon, Dec 2, 2013 at 12:12 PM, Robert Castelo wrote:
> hi Michael, thanks for your quick response, comments below..
>
>
> On 12/2/13 6:29 PM, Michael Lawrence wrote:
>
> A DataFrame being a SimpleList,
The replacement method for fixed<- on a VCFHeader has been added to the
devel version 1.19.17.
Valerie
On 11/20/2013 10:08 AM, Valerie Obenchain wrote:
Correction below.
On 11/20/2013 09:59 AM, Valerie Obenchain wrote:
Hi Delphine,
I've cc'd your message to the Bioconductor mailing list.
hi Michael, thanks for your quick response, comments below..
On 12/2/13 6:29 PM, Michael Lawrence wrote:
> A DataFrame being a SimpleList, coercion to list is immediate, so just
> coerce to a list instead of a data.frame.
>
> do.call(pmax, as.list(DataFrame(x=1:10,y=2:11)))
>
thanks for tip, so i
Files with a .vcf extension often get scrubbed from email because they
are interpreted as a 'vCard' file. (At least this has been my
experience.) Changing the file extension to something other than '.vcf'
usually solves the problem.
I was able to reproduce the error with the file you pasted in
A DataFrame being a SimpleList, coercion to list is immediate, so just
coerce to a list instead of a data.frame.
do.call(pmax, as.list(DataFrame(x=1:10,y=2:11)))
I added a do.call method in IRanges that does this for you.
On Mon, Dec 2, 2013 at 8:58 AM, Robert Castelo wrote:
> hi,
>
> i would
hi,
i would like to do the following:
library(IRanges)
do.call(pmax, data.frame(x=1:10, y=2:11))
[1] 2 3 4 5 6 7 8 9 10 11
with 'DataFrame' objects:
do.call(pmax, DataFrame(x=1:10, y=2:11))
Error in do.call(pmax, DataFrame(x = 1:10, y = 2:11)) :
second argument must be a list
conc
Hi, Dario
Thanks for comment.
Could you run getChipInfo(rownames(stage3expression), species = "Human")
and show the return values?
Best
Gilbert
On 12/2/13 12:00 AM, "Dario Strbenac" wrote:
>> patientNuIDs <- IlluminaID2nuID(rownames(stage3expression), species =
>>"Human")
>Warning message:
>
