Hi Michael,
Thanks for the fast patching. However, going a step further and trying
to read the VCF again fails (with VariantAnnotation_1.9.35
). I'm not sure if this is related to the same issue.
#+BEGIN_SRC R
library(VariantAnnotation)
example(VRanges)
writeVcf(vr, "out.vcf") ## works
read
Great, thanks for fixing this.
On 02/05/2014 08:38 PM, Michael Lawrence wrote:
Thanks, fixed in 1.9.35/1.8.11.
On Wed, Feb 5, 2014 at 1:21 AM, Julian Gehring wrote:
Hi,
I'm not sure whether this is related to the other bug. Anyway, 'writeVcf'
fails if the sample names of a 'VRanges' obj
Hi Julian,
Thanks for this one. It was a bug in Rsamtools, now fixed in devel, version
1.15.27. I'll leave it to Martin/Val to OK it and push to release.
Michael
On Thu, Feb 6, 2014 at 1:46 AM, Julian Gehring wrote:
> Hi Michael,
>
> Thanks for the fast patching. However, going a step further
