My apologies, my issue was with the AlignmentTrack, not the
AnnotationTrack as previously stated.
Lance Parsons wrote:
First, let me say thanks for such an excellent genome visualization
package. I simply couldn't find anything comparable when it came to
producing publication quality genome p
Registration for the Bioconductor 2014 Annual Conference, to be held in Boston,
July 30 (Developer Day) - August 1 is now open!
https://register.bioconductor.org/BioC2014/
Additional workshops and short talks will be added.
Looking forward to seeing you in Boston,
Martin Morgan
on behalf of
Thanks.
I have some concerns about the *ExtraArgs() functions. Passing flexible
args to findOverlaps in the existing mode functions fundamentally
changes the documented behavior. The modes were created to capture
specific overlap situations pertaining to gene features which are
graphically de
Hi Valerie,
On Thu May 1 13:27:16 2014, Valerie Obenchain wrote:
I have some concerns about the *ExtraArgs() functions. Passing
flexible args to findOverlaps in the existing mode functions
fundamentally changes the documented behavior. The modes were created
to capture specific overlap situatio
On 05/01/2014 02:05 PM, Ryan wrote:
Hi Valerie,
On Thu May 1 13:27:16 2014, Valerie Obenchain wrote:
I have some concerns about the *ExtraArgs() functions. Passing
flexible args to findOverlaps in the existing mode functions
fundamentally changes the documented behavior. The modes were created
GenomicAlignments 1.1.8 has a 'preprocess.reads' argument. This should
be a function where the first argument is 'reads' and the return value
is compatible with 'reads' in the pre-defined count modes.
I've used your ResizeReads() as an example in the man page. I think the
ability to pre-filter
