- Original Message -
> From: "Leonardo Collado Torres"
> To: bioc-devel@r-project.org
> Sent: Wednesday, July 23, 2014 6:41:06 PM
> Subject: Re: [Bioc-devel] Distinction between release and devel package
> websites
>
> > Date: Wed, 23 Jul 2014 11:33:44 -0700
> > From: Martin Morg
On Thu, Jul 24, 2014 at 5:34 PM, Hervé Pagès wrote:
> Hi Henrik,
>
>
> On 07/24/2014 06:03 AM, Henrik Bengtsson wrote:
>>
>> On Thu, Jul 24, 2014 at 3:16 AM, Hervé Pagès wrote:
>>>
>>> Hi Andrzej,
>>>
>>>
>>> On 07/22/2014 02:28 PM, Andrzej Oleś wrote:
Hi Hervé,
thank you
Herve,
It doesn't handle that, so it is a time-saving approximation akin to
devtools, rather than an exact solution.
I recognize and agree with the reasons that Bioc devel targets R devel
(sometimes); the question becomes how often BioC devel will actually fail
if you use an R with a slightly "ol
Seems like this should work
genome(gene.models) <- "GRCh37"
but
Error in .seqinfo.TranscriptDbReplace(x, new2old = new2old, force = force,
:
'new2old' must be specified when replacing the 'seqinfo' of a
TranscriptDb object
Michael
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___
Hi Gabe,
Thanks for the heads up, sounds promising.
Note that one major difficulty of switching between BioC release
and devel is that between October and April it also requires to switch
between R release and devel. How is that handled in switchr?
Thanks,
H.
On 07/24/2014 08:42 AM, Gabe Beck
Hey all,
One of the things that has come up from the recent Release/Devel
distinction thread on this list is that people don't consider there to be
an easy way of handling both at the same time.
I'd like to offer an alternative based on the switchr
https://github.com/gmbecker/switchr package I'm
Hi Henrik,
On 07/24/2014 06:03 AM, Henrik Bengtsson wrote:
On Thu, Jul 24, 2014 at 3:16 AM, Hervé Pagès wrote:
Hi Andrzej,
On 07/22/2014 02:28 PM, Andrzej Oleś wrote:
Hi Hervé,
thank you for the demo! Yes, this is definitely much more clear than
just a different color. Maybe we could firs
On Thu, Jul 24, 2014 at 3:16 AM, Hervé Pagès wrote:
> Hi Andrzej,
>
>
> On 07/22/2014 02:28 PM, Andrzej Oleś wrote:
>>
>> Hi Hervé,
>>
>> thank you for the demo! Yes, this is definitely much more clear than
>> just a different color. Maybe we could first implement this idea on
>> the build/check r
Thanks, Martin! That is just what I was looking for.
Cheers,
Keith
On Sun, Jul 13, 2014 at 8:32 AM, Martin Morgan wrote:
> On 07/13/2014 05:24 AM, Keith Hughitt wrote:
>
>> (patch with above change...)
>>
>>
> it's better to amend the NAMESPACE to include
>
> importFrom(AnnotationDbi, select
