Hello,
I would like to announce the availability of the new R package 'GSAR' released
recently with Bioconductor 3.0. The package offers a suite of tests to perform
self-contained gene set analysis (GSA). We would highly appreciate your
feedback and suggestions to help us improve the package.
Sounds great. I think GenomicFiles is a good place for such a function -
it's along the lines of what we wanted to accomplish with pack / unpack.
Maybe your new function can be used by pack once finished. There's
definitely room for expanding that functionality.
Valerie
On 10/27/2014 12:07
hi Valerie,
this sounds good to me.
I am thinking of working on a function (here or elsewhere) that helps
decide, for reduce by range, how to optimally chunk GRanges into a
GRangesList. Practically, this could involve sampling the size of the
imported data for a subset of cells in the (ranges, fi
Looks like the test code didn't make it through. Attaching again ...
On 10/27/2014 11:35 AM, Valerie Obenchain wrote:
Hi Kasper and Mike,
I've added 2 new functions to GenomicFiles and deprecated the old
classes. The vignette now has a graphic which (hopefully) clarifies the
MAP / REDUCE mecha
Hi Kasper and Mike,
I've added 2 new functions to GenomicFiles and deprecated the old
classes. The vignette now has a graphic which (hopefully) clarifies the
MAP / REDUCE mechanics of the different functions.
Below is some performance testing for the new functions and answers to
leftover que
Hi,
I would like to draw your attention towards two R packages released
recently with Bioconductor 3.0. We would highly appreciate your feedbacks
to help us improve them further.
compEpiTools: Tools for computational epigenomics developed for the
analysis, integration and simultaneous visuali
