Hi Nate,
Thanks for your quick and enlightening reply!
No, I was actually not aware that the suggested code for the Makevars
file has changed. I updated that in my package and the problem persists:
the statement in the Makevars file (also the updated one in the
documentation you suggested)
On 03/20/2015 06:39 AM, Ulrich Bodenhofer wrote:
[list admins: please delete my previous incomplete message from the
list; sorry for any inconvenience]
Hi,
Next update (I am deeply sorry for sending so many replies, but I
think these might be interesting for users who face the same
The Makevars.win you say works for Windows is the current recommendation
for Makevars.win in the Rsamtools Using samtools C libraries vignette.
Regarding the Linux issue, yes, the r_arch argument to configure is
adding the intermediate subdirectory. It is my fault the current (Linux)
- Original Message -
From: Jianhong Ou jianhong...@umassmed.edu
To: bioc-devel@r-project.org
Sent: Thursday, March 19, 2015 8:36:28 AM
Subject: [Bioc-devel] How to remove warnings when load BiocGenerics,
AnnotationDbi and GenomeInfoDb
Hi,
How could we mask the warnings when
Hi,
Could someone tell me about the possible causes of ...NOT SUPPORTED...NOT
SUPPORTED...NOT SUPPORTED... message for OS X Mavericks?
http://www.bioconductor.org/checkResults/devel/bioc-LATEST/
Mavericks is the OS I developed my package on.
Thank you,
Vlad
[[alternative HTML version
- Original Message -
From: Vladislav Petyuk pet...@gmail.com
To: bioc-devel@r-project.org
Sent: Friday, March 20, 2015 2:43:03 PM
Subject: [Bioc-devel] Mavericks Not Supported message
Hi,
Could someone tell me about the possible causes of ...NOT
SUPPORTED...NOT
SUPPORTED...NOT
Hi Nate,
Thanks also for this useful hint! I will definitely consider it, but not
immediately. I have seen that the tabix API (which is the only part of
Rsamtools I am using) has changed significantly in Rhtslib as compared
to Rsamtools. So I do not think I will manage to change my code
I've updated the Rsamtools Using samtools C libraries vignette. I've
also updated VariantAnnotation and other packages that link to samtools
libraries. They should be available tomorrow, or you can download the
source from subversion if you're in a hurry.
Before you had for your Makevars
Hi everyone,
Just a reminder - Friday, March 27, 2015 is the deadline for submitting
new
packages. If you submit your package on Friday, your package will still
be considered for the upcoming release.
A detailed release schedule can be found here:
