Thanks Dan,
renaming the repository to RUVSeq solved the problem.
If you're still interested, there was no output from the script and the
value of $? was
$ echo $?
128
Best,
davide
On Fri, Jun 19, 2015 at 8:18 PM Dan Tenenbaum
wrote:
>
>
> - Original Message -
> > From: "davide risso
- Original Message -
> From: "davide risso"
> To: "Leonardo Collado Torres" , "Dan Tenenbaum"
> , "Jim Hester"
>
> Cc: bioc-devel@r-project.org
> Sent: Friday, June 19, 2015 8:07:29 PM
> Subject: Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors
>
>
> Hi all,
>
>
> I don't know why
Hi all,
I don't know why but this is not working for me.
I deleted the bridge for my RUVSeq package.
I forked Bioconductor-mirror/RUVSeq into drisso/RUVSeq-mirror
I then run:
$ git clone https://github.com/drisso/RUVSeq-mirror
$ bash ../update_remotes.sh
$ git checkout devel
error: pathspec 'de
Hi,
Dan previously said:
Try starting over again. Remove your local repository and do a fresh clone:
git clone https://github.com/leekgroup/derfinderHelper.git
cd derfinderHelper
bash /path/to/update_remotes.sh
git checkout devel
git svn rebase
git merge master --no-edit
git svn dcommit --add-au
Mike,
We are unable to reproduce this issue using the commands provided. Maybe
try starting over from scratch and see if it works, perhaps there was a
network error the first time you tried it?
Jim
On Fri, Jun 19, 2015 at 3:03 PM, Mike wrote:
> I am having trouble to set up the remote.
>
> gi
I am having trouble to set up the remote.
git clone https://github.com/RGLab/flowQ
cd flowQ/
git branch -a
* master
remotes/origin/HEAD -> origin/master
remotes/origin/master
curl -O
https://raw.githubusercontent.com/Bioconductor/mirror/master/update_remotes.sh
bash update_remotes.sh
fatal
- Original Message -
> From: "Guangchuang Yu"
> To: bioc-devel@r-project.org
> Sent: Wednesday, June 17, 2015 5:04:04 AM
> Subject: Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors
>
> Dear Dan,
>
> I update my package
> GOSemSim(https://github.com/GuangchuangYu/GOSemSim),
> with the f
Hmmm, ok. I kind of liked having the message about being a fork of the
Bioc-mirror, but the difference message makes it a little messy. Oh well.
Was an interesting experiment.
On Fri, Jun 19, 2015 at 11:19 AM Jim Hester
wrote:
> I think these are unavoidable artifacts with the current setup. Th
I think these are unavoidable artifacts with the current setup. The
commits from the Bioconductor-mirror are coming from SVN after being
translated so they have extra metadata attached to the commit message,
while your original commits do not have this. Therefore GitHub cannot
properly disambigua
So this seems to work quite nicely. But in my own testing of committing
with my categoryCompare package, there is one interesting issue of Github
complaining about how many commits ahead / behind the fork is.
So I moved my old github repo, and then made a fresh fork from the
Bioconductor mirror, a
The first Bioconductor Asia-Pacific Developers' meeting will be held on 8th
September 2015 in Tokyo as a satellite event to GIW/InCoB2015
(http://www.jsbi.org/giw-incob2015/index.html).
For more information, visit the meeting website
http://www.bioconductor.org/help/course-materials/2015/Bio
11 matches
Mail list logo
