Hej alla!
In the simpleRNASeq function of the easyRNASeq package, I start by
instantiating a SummarizedExperiment object not initially providing the
rowRanges. This results in the creation of an object of the class
SummarizedExperiment0. When later, once I have validated the annotation, I try
Hi,
I'm trying to map rsi Ids provided in the Affymetrix cytoScanHD arrays, using
the 'SNPlocs.Hsapiens.dbSNP142.GRCh37' package, and rsid2loc().
It turns out that some of these rsi ids are unknown, e.g. rsi7553394, and
rsi2loc() fails on the entire search.
It would be nice if rsi2loc() would
Erratum: the rsiIds come from Affymetrix-SNP6.0, not cytoScanHD.
Frederic Commo
Bioinformatics, U981
Gustave Roussy
De : Bioc-devel [bioc-devel-boun...@r-project.org] de la part de COMMO Frederic
[frederic.co...@gustaveroussy.fr]
Date d'envoi : lundi 29
Done in SummarizedExperiment 0.3.2.
Thanks for the feedback,
H.
On 06/29/2015 10:26 PM, Hervé Pagès wrote:
Hi Nico,
It seems reasonable indeed to support rowRanges- on
SummarizedExperiment0. It might be a little bit surprising for the
user that the setter changes the class of the object but
Hi Nico,
It seems reasonable indeed to support rowRanges- on
SummarizedExperiment0. It might be a little bit surprising for the
user that the setter changes the class of the object but it looks
like a perfectly legit situation for doing so here. Also there are
some precedents:
x - 1:5
