Re: [Bioc-devel] Memory issues with BiocParallel::SnowParam()

2015-07-15 Thread Valerie Obenchain
Correction below. On 07/15/2015 04:14 PM, Valerie Obenchain wrote: Hi, BiocParallel in release and devel are quite similar so I'd like to narrow the focus to "before the changes to SnowParam" and after. This means BiocParallel 1.0.3 (R 3.1) vs BiocParallel 1.3.34 (R 3.2.1) which is the current

Re: [Bioc-devel] Memory issues with BiocParallel::SnowParam()

2015-07-15 Thread Valerie Obenchain
Hi, BiocParallel in release and devel are quite similar so I'd like to narrow the focus to "before the changes to SnowParam" and after. This means BiocParallel 1.0.3 (R 3.1) vs BiocParallel 1.3.34 (R 3.2.1) which is the current devel. (1) master vs worker memory I'm more concerned about mem

Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors

2015-07-15 Thread Siddhartha Bagaria via Bioc-devel
Thank you Jim for your reply. SubGit does highlight its ability to handle non-linear histories as compared to GitSVN -- http://www.subgit.com/documentation/gitsvn.html. I will keep looking as well. Thanks. On Wed, Jul 15, 2015 at 9:03 AM Jim Hester wrote: > Sid, > > I think you have character

Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors

2015-07-15 Thread Jim Hester
Sid, I think you have characterized the main issue well, a number of people have run into issues stemming from the same problem. ( https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007726.html, https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007730.html and a number of off-list queries). As

[Bioc-devel] New package: rCGH

2015-07-15 Thread COMMO Frederic
Hi All, We're pleased to announce that our package 'rCGH' is now available on Bioconductor (devel). This package provides functions for analyzing and interactively visualizing array-based genomic profiles. As inputs, rCGH supports Agilent dual-color Feature Extraction files (.txt), from 44 to