[Bioc-devel] BiocCheck failing

Hi everyone, I just submitted a package to Bioconductor. All the tests passed except for the BiocCheck step in the "Mac OS X Mavericks (10.9.5)/x86_64" OS. The version of BiocCheck used was 1.5.9 and the error is below. Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was

Re: [Bioc-devel] BiocCheck failing

- Original Message - > From: "Samuel E Zimmerman" > To: bioc-devel@r-project.org > Sent: Wednesday, September 30, 2015 2:02:06 PM > Subject: [Bioc-devel] BiocCheck failing > > Hi everyone, > > I just submitted a package to Bioconductor. All the tests passed >

Re: [Bioc-devel] Adding a lengths() method to List class

Hi Michael, I was expecting this to just work: base::lengths(IntegerList(1:4, 1:6)) but it doesn't: Error in base::lengths(IntegerList(1:4, 1:6)) : 'x' must be a list or atomic vector The man page says: This function loops over ‘x’ and returns a compatible vector

Re: [Bioc-devel] Adding a lengths() method to List class

It wasn't a conscious choice, but it would slow things down a bit. Not by much though, since we're already attempting dispatch on length(). I can make the change. On Wed, Sep 30, 2015 at 1:33 PM, Hervé Pagès wrote: > Hi Michael, > > I was expecting this to just work: > >

[Bioc-devel] packages marked as deprecated in the upcoming release

Hi all, In accordance with our package end-of-life policy (http://www.bioconductor.org/developers/package-end-of-life/) we have marked the following packages as deprecated: CausalR DAVIDQuery eisa GenoView NGScopy Two packages (R3CPET and IdMappingRetrieval) depend on DAVIDQuery and one

Re: [Bioc-devel] Adding a lengths() method to List class

On 09/30/2015 05:28 PM, Michael Lawrence wrote: It wasn't a conscious choice, but it would slow things down a bit. Not by much though, since we're already attempting dispatch on length(). I can make the change. That would be great. Thanks Michael! H. On Wed, Sep 30, 2015 at 1:33 PM, Hervé