Hi Leonardo,
thank you for reporting your issue with BiocStyle. I haven't experienced it
before.
The error you're getting indicates that BiocStyle might not be loaded
before processing the code from the YAML header. This is normally handled
by the BiocStyle::html_document() function which loads B
If we're going to do that, it brings up the question of whether
is.unsorted() could be made to handle multiple vectors like order(). It
would be nice to implement that logic only once. Suggestions for the API?
New function? Additional argument? Patches welcome ;)
Michael
On Mon, Nov 2, 2015 at 10
Hi Michael,
Sorry, I took this off-list with Hervé. I've written a prototype
is.unsorted,GenomicRanges-method.
I structured it following the lead of order,GenomicRanges-method, so
there's an outer R-level that "translates" the GenomicRanges object to
4 integer vectors (actually the slowest part o
Great. My point was that the "integer quad" algorithm could be generalized
to any number of vectors and made part of base R. But maybe that's too much
work for now.
Michael
On Tue, Nov 3, 2015 at 3:50 AM, Peter Hickey wrote:
> Hi Michael,
>
> Sorry, I took this off-list with Hervé. I've written
Hi Dan,
many thanks for introducing the Open Graph Protocol on package landing
pages! It's nice to see how package presentation is constantly improving.
I've noticed is that the Bioconductor logo gets typically resized and
cropped to a rectangular aspect ratio of 1.66 (LinkedIn) or 1.91
(Facebook
Hi,
Thanks for the ideas! It does work when using BiocStyle::doc_date(). I
also have to load BiocStyle immediately after the YAML header.
Otherwise I get an error that functions like Biocpkg() are not found.
Best,
Leo
___
Bioc-devel@r-project.org mailing
Hello all,
The AnnotationHub server will be down for maintenance tomorrow (Wed Nov 4) at
5PM Seattle Time (01:00 UTC).
The downtime should be no longer than one hour, probably much shorter than that.
Thanks,
Dan
___
Bioc-devel@r-project.org mailing l
Dear all,
I found devel branch reject my commit by throwing the following msg:
➜ clusterProfiler git:(master) svn ci -m 'facet dotplot'
svn: E175013: Commit failed (details follow):
svn: E175013: Access to '/bioconductor/!svn/me' forbidden
There maybe some file permission issue.
Bests,
Guangch
- Original Message -
> From: "Yu, Guangchuang"
> To: "bioc-devel"
> Sent: Tuesday, November 3, 2015 5:12:02 PM
> Subject: [Bioc-devel] commit fail in devel branch
> Dear all,
>
> I found devel branch reject my commit by throwing the following msg:
>
> ➜ clusterProfiler git:(master)
Dear Dan,
Thank you for your quick reply!
It works by specifying my username and password.
Bests,
Guangchuang
On Wed, Nov 4, 2015 at 9:16 AM, Dan Tenenbaum
wrote:
>
>
> - Original Message -
> > From: "Yu, Guangchuang"
> > To: "bioc-devel"
> > Sent: Tuesday, November 3, 2015 5:12:02
Hi,
The daily build report showed a similar error in several of my
packages when building on Linux and Windows. I was able to reproduce
this error under R-devel on Windows and it pops up when using the
citation() function. In particular with BiocParallel and S4Vectors.
This error doesn't pop up i
It is this commit
r69509 | hornik | 2015-10-12 07:06:54 -0400 (Mon, 12 Oct 2015) | 1 line
Fixes for PR #16240 and PR #16550.
which is failing when z$u
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