Re: [Bioc-devel] Base class for interaction data - expressions of interest

Just to say that this is a great idea. If this starts as a github package (or in svn, we can create a location for you if you'd like) I and others would I am sure be happy to try to provide any guidance / insight. The main design principles are probably to reuse as much as possible from

Re: [Bioc-devel] Base class for interaction data - expressions of interest

Metoo. This is becoming an item of major interest for some treatment biomarkers we are studying. --t > On Nov 7, 2015, at 11:33 AM, Morgan, Martin > wrote: > > Just to say that this is a great idea. If this starts as a github package (or > in svn, we can

Re: [Bioc-devel] Base class for interaction data - expressions of interest

I agree with Martin, I would love to see something like that. Especially if this would not be restricted to chromatin interactions, but also allows to represent protein-protein, transcriptionFactor-targetGene, miRNA-mRNA etc (e.g. via suitably tailored subclasses). This might nicely work together