Dear Martin,
Thanks a lot for fixing it in the trunk. I do appreciate it. It really
makes it a lot easier to use topGO when creating markdown files.
Witold
PS. I did delete the github fork.
On 5 February 2016 at 12:47, Morgan, Martin
wrote:
> I followed your lead and updated topGO in Bioc deve
I followed your lead and updated topGO in Bioc devel branch to version 2.23.3,
replacing cat() with message() directly rather a wrapper .cat2message(). I did
not change use of cat() in print() and show() methods, where output to stdout
is appropriate.
Generally, using message() simplified code,
I did replace the call to cat in topGO with with a call to a package
private .cat2message function (which makes some adjustments to the
passed arguments so that the messages look as before). The patched
package is available from here.
https://github.com/wolski/topGO
Upstream commits made on 3 Febru
