[Bioc-devel] Bioconductor 3.3 release schedule

The Bioconductor 3.3 release schedule is now available: http://bioconductor.org/developers/release-schedule/ One important deadline is April 6, after which we will not accept any new packages into the release. Also, all packages must pass R CMD build and R CMD check without error by April 1,

Re: [Bioc-devel] github mirror

On Fri, Feb 19, 2016 at 12:52 PM, Dan Tenenbaum wrote: > https://github.com/Bioconductor/mirror.git I cloned out the update_remotes.sh script. Executing that results in a fatal error because the "bioc" remote has already been defined. So I edited that script to

Re: [Bioc-devel] github mirror

BTW, I did the following: git clone https://github.com/kasperdanielhansen/minfi.git cd minfi ~/dev/github/mirrors/update_remotes.sh # this is where I have cloned https://github.com/Bioconductor/mirror.git git branch -a dtenenba@loquat minfi (master)$ git branch -a devel * master release-3.0

[Bioc-devel] [Bio-dev]: how to iterate and index set of bed files ?

Dear all: I am developing my package for my projects, and I have done couple of utility function that used for parsing bed files in R. My goal is to parse and analyze multiple bed files in parallel, in ideal case, we have three sample that comes from chip-seq experiments where each has different