Re: [Bioc-devel] readVcf appears to cause Windows i386 check error

2016-04-04 Thread Dan Tenenbaum
There is a fresh build of your package now and it looks like this problem has cleared up. It seems there was a broken version of Biostrings installed, I'm investigating how it happened. Dan - Original Message - > From: "Riester, Markus" > To: "bioc-devel"

[Bioc-devel] Bioconductor 3.3 release schedule has been updated to reflect R release delay

2016-04-04 Thread Dan Tenenbaum
Bioconductors-- In case you missed it, R announced a delay in its release schedule: https://stat.ethz.ch/pipermail/r-announce/2016/000599.html Their full (updated) release schedule is at http://developer.r-project.org/ Accordingly, Bioconductor has updated its release schedule:

Re: [Bioc-devel] readVcf appears to cause Windows i386 check error

2016-04-04 Thread Obenchain, Valerie
Thanks for the report. Dan is looking into it. Valerie On 04/04/2016 08:44 AM, Riester, Markus wrote: > Hi, > > my package PureCN started to fail CHECK on Windows (i386 only, x64 seems to > work). > > http://bioconductor.org/spb_reports/PureCN_0.99.6_buildreport_20160402193854.html > > Looks

Re: [Bioc-devel] readVcf appears to cause Windows i386 check error

2016-04-04 Thread Dan Tenenbaum
There are two installations of R on moscato2; one for the nightly builds and one for the single package builder. I can reproduce this problem on the latter but not the former. I will look into it further, pulling in others as necessary. Thanks for the report, Dan - Original Message -

[Bioc-devel] readVcf appears to cause Windows i386 check error

2016-04-04 Thread Riester, Markus
Hi, my package PureCN started to fail CHECK on Windows (i386 only, x64 seems to work). http://bioconductor.org/spb_reports/PureCN_0.99.6_buildreport_20160402193854.html Looks like a problem in VariantAnnotation to me, or is this something I need to fix? Thanks a lot, Markus

Re: [Bioc-devel] dropping perceval and petty from supported platforms

2016-04-04 Thread Dan Tenenbaum
Yes, you can remove it from devel. Dan - Original Message - > From: "Ramon Diaz-Uriarte" > To: "bioc-devel" > Cc: "ramon diaz" > Sent: Monday, April 4, 2016 2:30:34 AM > Subject: [Bioc-devel] dropping perceval and

[Bioc-devel] dropping perceval and petty from supported platforms

2016-04-04 Thread Ramon Diaz-Uriarte
Dear All, In one of the packages I maintain, I have a .BBSoptions file with the single entry UnsupportedPlatforms: perceval, petty (because I used C++-11, etc). I understand this is no longer necessary, since those platforms are not supported anyway for 3.3