Dear bioC developer,
I included in my bioCancer/inst/extdata a Reactome FI database (/
http://reactomews.oicr.on.ca:8080/caBigR3WebApp2015/FIsInGene_031516_with_annotations.txt.zip
)
Gene1Gene2AnnotationDirectionScore
16-5-5CDC42predicted-0.82
16-5-5RHOJpred
Hi Karim,
I can help you put together an annotation package.
Here are the general guidelines:
http://www.bioconductor.org/developers/package-guidelines/
We ask that annotations packages implement the select() interface from
AnnotationDbi (eg, keys(), columns(), keytypes(), etc.). You can see ho
Dan,
That is great! Thanks for letting us know!
Michael, thank for making it happen so quickly! It works like a charm!
Best,
Julie
On 4/2/16 1:58 PM, "Bioc-devel on behalf of Dan Tenenbaum"
wrote:
>BTW, looks like the change has been made to R-devel:
>
> CHANGES IN R-devel NEW FEATURES
>
Michael, do you know if this change will be (or has already been) backported
into R-3.3.0?
Thanks.
Dan
- Original Message -
> From: "Lihua Zhu"
> To: "Dan Tenenbaum" , "Michael Lawrence"
>
> Cc: "bioc-devel"
> Sent: Tuesday, April 5, 2016 9:49:26 AM
> Subject: Re: [Bioc-devel] names
I will try to sneak that in since it seems to work and it would be
nice to use it before this Fall.
On Tue, Apr 5, 2016 at 10:32 AM, Dan Tenenbaum wrote:
> Michael, do you know if this change will be (or has already been) backported
> into R-3.3.0?
>
> Thanks.
> Dan
>
>
> - Original Message
Hi,
Actually I have conflict between DT and shiny
Warning: replacing previous import ‘shiny::dataTableOutput’ by
‘DT::dataTableOutput’ when loading ‘bioCancer’
Warning: replacing previous import ‘shiny::renderDataTable’ by
‘DT::renderDataTable’ when loading ‘bioCancer’
I would like to import sh
Roxygen does not yet support the feature. For now you'll have to live
with the warning or just importFrom(shiny, ...). Maybe there is some
way to manually patch the NAMESPACE with Roxygen?
Honestly, I would recommend against using Roxygen to manage your
NAMESPACE. Just write the thing...
On Tue
If I include manually the exception, I hve to write this?
import(shiny, except=c('dataTableOutput','renderDataTable')
Thanks
Karim
On Tue, Apr 5, 2016 at 7:28 PM, Michael Lawrence
wrote:
> Roxygen does not yet support the feature. For now you'll have to live
> with the warning or just importFro
Yea, with the closing )
On Tue, Apr 5, 2016 at 12:37 PM, Karim Mezhoud wrote:
> If I include manually the exception, I hve to write this?
>
> import(shiny, except=c('dataTableOutput','renderDataTable')
> Thanks
> Karim
>
> On Tue, Apr 5, 2016 at 7:28 PM, Michael Lawrence
> wrote:
>>
>> Roxygen d
==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer
* installing to library
‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘bioCancer’ ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()),
You need R 3.4 for right now.
On Tue, Apr 5, 2016 at 1:16 PM, Karim Mezhoud wrote:
> ==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer
>
> * installing to library
> ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
> * installing *source* package ‘bioCancer’ ...
> ** R
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