On Wed, Apr 27, 2016 at 10:52 AM, Hervé Pagès wrote:
> On 04/27/2016 04:24 AM, Michael Lawrence wrote:
>>
>> On Tue, Apr 26, 2016 at 11:12 PM, Hervé Pagès
>> wrote:
>>>
>>> Hi,
>>>
>>> I would not discard defining a SummarizedExperiment subclass so
On 04/27/2016 04:24 AM, Michael Lawrence wrote:
On Tue, Apr 26, 2016 at 11:12 PM, Hervé Pagès wrote:
Hi,
I would not discard defining a SummarizedExperiment subclass so quickly.
SummarizedExperiment is very generic and can contain any kind of data.
IIUC the csaw package
On 04/27/2016 03:18 AM, Martin Morgan wrote:
On 04/27/2016 02:12 AM, Hervé Pagès wrote:
Hi,
I would not discard defining a SummarizedExperiment subclass so quickly.
SummarizedExperiment is very generic and can contain any kind of data.
IIUC the csaw package uses SummarizedExperiment to
I agree with Herve that making a subclass (is that the technical term?)
might be a good idea. This is what I would do. And this is what has been
done historically for all the extensions of ExpressionSet and eSet from
Biobase. The issue with a general class like SummarizedExperiment is that
On Tue, Apr 26, 2016 at 11:12 PM, Hervé Pagès wrote:
> Hi,
>
> I would not discard defining a SummarizedExperiment subclass so quickly.
> SummarizedExperiment is very generic and can contain any kind of data.
> IIUC the csaw package uses SummarizedExperiment to store a
On 04/27/2016 02:12 AM, Hervé Pagès wrote:
Hi,
I would not discard defining a SummarizedExperiment subclass so quickly.
SummarizedExperiment is very generic and can contain any kind of data.
IIUC the csaw package uses SummarizedExperiment to store a particular
kind of data (ChIP-seq data) and
On 04/27/2016 05:30 AM, Andrzej Oleś wrote:
Dear Ludwig,
according to http://bioconductor.org/developers/release-schedule/ release
(BioC 3.2) builds were to stop on April 22. That's probably why they are
not updated anymore.
yes the _release_ builds have stopped. Devel builds still continue
Dear Ludwig,
according to http://bioconductor.org/developers/release-schedule/ release
(BioC 3.2) builds were to stop on April 22. That's probably why they are
not updated anymore.
Cheers,
Andrzej
On Wed, Apr 27, 2016 at 11:08 AM, Ludwig Geistlinger <
ludwig.geistlin...@bio.ifi.lmu.de> wrote:
Dear Dan,
For some reason, the build reports are still showing the snapshot of
Saturday:
http://bioconductor.org/checkResults/release/bioc-LATEST/EnrichmentBrowser/
As there is an error, I would like to know whether this is something
persistent or only something temporary.
Thanks,
Ludwig
--
Hi,
I would not discard defining a SummarizedExperiment subclass so quickly.
SummarizedExperiment is very generic and can contain any kind of data.
IIUC the csaw package uses SummarizedExperiment to store a particular
kind of data (ChIP-seq data) and I believe specialization is a
legitimate
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