Re: [Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread Jesper Gådin
I am developing packages(if that is of importance), and hoped the thread could develop into discussions about how to improve the functions addressed. But can admit that I was not sure where to post this one, as it definitely is of general concern as well. Anyway, if anyone found this interesting,

Re: [Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread James W. MacDonald
The Bioc-devel list is intended for people who are developing packages. Your question should be posted on the bioconductor support site, https://support.bioconductor.org. Jim On Fri, May 27, 2016 at 11:05 AM, Jesper Gådin wrote: > Hello everyone, > > I find inconsistent results from applyPile

[Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread Jesper Gådin
Hello everyone, I find inconsistent results from applyPileups and pileLettersAt. I have a placed a full example on github, so you can try the code with data that will reproduce what I am suspecting is a "bug". #Repo with reproducible example https://github.com/pappewaio/ExampleData #Here a short

Re: [Bioc-devel] [SPAM???] Re: Pushing updates in the release branch

2016-05-27 Thread Charles Joly
Hello Valerie, The tricky part with Encode is that there is no release schedule. For instance, in the last month, there has been a few hundreds new datasets ( https://www.encodeproject.org/news/). I think there is an increase in the amount of data submitted before the Encode users meeting in june.