[Bioc-devel] JAGS 4.X.Y not installed on Windows (tokay1)

2016-09-22 Thread Yu Kong
Dear BioConductor community, My package (MADSEQ) passed the build on Linux (*malbec1*) and Mac (*morelia*) build servers. However it fails on Windows (tokay1) server for multiple days. Our package is a Bayesian model depends on JAGS sampler. The error message said "error: Failed to locate any

Re: [Bioc-devel] msPurity build fail on Mac OS X (morelia)

2016-09-22 Thread Thomas Lawson
Hi Laurent, Are you testing with valgrind? The 'Mismatched free() / delete / delete []' only becomes apparent when using valgrind. i.e. I have a document called mzR_test.R that contains the following code: #---

Re: [Bioc-devel] msPurity build fail on Mac OS X (morelia)

2016-09-22 Thread Laurent Gatto
On 22 September 2016 15:22, Kasper Daniel Hansen wrote: > Martin seemed to have fixed the original error, but recovered another one. > > Do we have a reproducible example with the other error (and did Martin's > fix get into mzR) and do we know which platforms it fails on? I haven't updated mzR

Re: [Bioc-devel] msPurity build fail on Mac OS X (morelia)

2016-09-22 Thread Kasper Daniel Hansen
Martin seemed to have fixed the original error, but recovered another one. Do we have a reproducible example with the other error (and did Martin's fix get into mzR) and do we know which platforms it fails on? Best, Kasper On Thu, Sep 22, 2016 at 10:10 AM, Laurent Gatto wrote:

Re: [Bioc-devel] msPurity build fail on Mac OS X (morelia)

2016-09-22 Thread Laurent Gatto
On 22 September 2016 14:12, Thomas Lawson wrote: > Hi All, > > Thanks for the help with this. I have been using valgrind to try and > pinpoint in my code the problem and it seems to be from mzR::openMSfile(). I can't reproduce this: > library(mzR) Loading required package: Rcpp > msmsPths <-

Re: [Bioc-devel] msPurity build fail on Mac OS X (morelia)

2016-09-22 Thread Thomas Lawson
Hi All, Thanks for the help with this. I have been using valgrind to try and pinpoint in my code the problem and it seems to be from mzR::openMSfile(). A simplified bit of code just using mzR I think will give the same results, see below:

Re: [Bioc-devel] Updating author/maintainer info

2016-09-22 Thread Bemis, Kylie
It works now, thanks! Kylie ~~~ Kylie Ariel Bemis Future Faculty Fellow College of Computer and Information Science Northeastern University kuwisdelu.github.io On Sep 22, 2016, at 1:45 AM, Hervé Pagès > wrote: